Literature DB >> 28242293

Lyophilized visually readable loop-mediated isothermal reverse transcriptase nucleic acid amplification test for detection Ebola Zaire RNA.

Christoph Carter1, Kevan Akrami2, Drew Hall3, Davey Smith4, Eliah Aronoff-Spencer5.   

Abstract

Recent viral outbreaks highlight the need for reliable, yet broadly deployable diagnostics for detection of epidemic and emerging pathogens. In this study we designed and optimized methods to visually detect viral nucleic acid by isothermal amplification and SYBR dye intercalation. We designed and tested loop-mediated isothermal amplification (LAMP) primers and lyophilized reactions to optimize the detection of Zaire Ebola Virus (ZEBOV) and further evolved the LAMP platform to allow room-temperature storage for deployment in resource limited settings. Our results demonstrated excellent sensitivity and specificity for viral nucleic acid sequences with lower limits of detection of less than 100 copies. Moreover, lyophilized reaction mixtures retained activity for prolonged periods under dry conditions at room temperature. This approach offers a way for detection of emerging viruses in resource limited settings.
Copyright © 2017. Published by Elsevier B.V.

Entities:  

Keywords:  Ebola; Lyophilized; Nucleic-acid-amplification; Reverse-transcriptase

Mesh:

Substances:

Year:  2017        PMID: 28242293      PMCID: PMC5568651          DOI: 10.1016/j.jviromet.2017.02.013

Source DB:  PubMed          Journal:  J Virol Methods        ISSN: 0166-0934            Impact factor:   2.014


  16 in total

1.  Loop-mediated isothermal amplification of DNA.

Authors:  T Notomi; H Okayama; H Masubuchi; T Yonekawa; K Watanabe; N Amino; T Hase
Journal:  Nucleic Acids Res       Date:  2000-06-15       Impact factor: 16.971

2.  Detection of loop-mediated isothermal amplification reaction by turbidity derived from magnesium pyrophosphate formation.

Authors:  Y Mori; K Nagamine; N Tomita; T Notomi
Journal:  Biochem Biophys Res Commun       Date:  2001-11-23       Impact factor: 3.575

Review 3.  Nucleic acid isothermal amplification technologies: a review.

Authors:  Pooria Gill; Amir Ghaemi
Journal:  Nucleosides Nucleotides Nucleic Acids       Date:  2008-03       Impact factor: 1.381

4.  Loop-mediated isothermal amplification (LAMP) of gene sequences and simple visual detection of products.

Authors:  Norihiro Tomita; Yasuyoshi Mori; Hidetoshi Kanda; Tsugunori Notomi
Journal:  Nat Protoc       Date:  2008       Impact factor: 13.491

5.  Rapid detection of HIV-1 by reverse-transcription, loop-mediated isothermal amplification (RT-LAMP).

Authors:  Kelly A Curtis; Donna L Rudolph; S Michele Owen
Journal:  J Virol Methods       Date:  2008-06-03       Impact factor: 2.014

6.  1H and 13C NMR assignments for the cyanine dyes SYBR Safe and thiazole orange.

Authors:  William E Evenson; Lauren M Boden; Katy A Muzikar; Daniel J O'Leary
Journal:  J Org Chem       Date:  2012-11-27       Impact factor: 4.354

Review 7.  Loop-mediated isothermal amplification technology: towards point of care diagnostics.

Authors:  Zablon Kithinji Njiru
Journal:  PLoS Negl Trop Dis       Date:  2012-06-26

Review 8.  Ebola virus disease 2013-2014 outbreak in west Africa: an analysis of the epidemic spread and response.

Authors:  Orlando Cenciarelli; Stefano Pietropaoli; Andrea Malizia; Mariachiara Carestia; Fabrizio D'Amico; Alessandro Sassolini; Daniele Di Giovanni; Silvia Rea; Valentina Gabbarini; Annalaura Tamburrini; Leonardo Palombi; Carlo Bellecci; Pasquale Gaudio
Journal:  Int J Microbiol       Date:  2015-03-17

9.  Development of reverse-transcription loop-mediated isothermal amplification assay for rapid detection of novel avian influenza A (H7N9) virus.

Authors:  Juan Liu; Qing-Gong Nian; Jing Li; Yi Hu; Xiao-Feng Li; Yu Zhang; Yong-Qiang Deng; Shun-Ya Zhu; Qing-Yu Zhu; E-De Qin; Tao Jiang; Cheng-Feng Qin
Journal:  BMC Microbiol       Date:  2014-11-14       Impact factor: 3.605

Review 10.  Nucleic acid amplification: Alternative methods of polymerase chain reaction.

Authors:  Md Fakruddin; Khanjada Shahnewaj Bin Mannan; Abhijit Chowdhury; Reaz Mohammad Mazumdar; Md Nur Hossain; Sumaiya Islam; Md Alimuddin Chowdhury
Journal:  J Pharm Bioallied Sci       Date:  2013-10
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  16 in total

1.  Comparison of Loop-Mediated Isothermal Amplification and Real-Time PCR Assays for Detection of Strongyloides Larvae in Different Specimen Matrices.

Authors:  Matthew R Watts; Rady Kim; Vishal Ahuja; Gemma J Robertson; Yasmin Sultana; Michael C Wehrhahn; Richard S Bradbury; Gwendolyn L Gilbert; Rogan Lee
Journal:  J Clin Microbiol       Date:  2019-03-28       Impact factor: 5.948

2.  Corona Detective: a simple, scalable, and robust SARS-CoV-2 detection method based on reverse transcription loop-mediated isothermal amplification.

Authors:  Guy Aidelberg; Rachel Aronoff; Tatiana Eliseeva; Francisco Javier Quero; Hortense Vielfaure; Martin Codyre; Kathrin Hadasch; Ariel B Lindner
Journal:  J Biomol Tech       Date:  2021-09

Review 3.  Loop-Mediated Isothermal Amplification Detection of SARS-CoV-2 and Myriad Other Applications.

Authors:  Keith J M Moore; Jeremy Cahill; Guy Aidelberg; Rachel Aronoff; Ali Bektaş; Daniela Bezdan; Daniel J Butler; Sridar V Chittur; Martin Codyre; Fernan Federici; Nathan A Tanner; Scott W Tighe; Randy True; Sarah B Ware; Anne L Wyllie; Evan E Afshin; Andres Bendesky; Connie B Chang; Richard Dela Rosa; Eran Elhaik; David Erickson; Andrew S Goldsborough; George Grills; Kathrin Hadasch; Andrew Hayden; Seong-Young Her; Julie A Karl; Chang Hee Kim; Alison J Kriegel; Thomas Kunstman; Zeph Landau; Kevin Land; Bradley W Langhorst; Ariel B Lindner; Benjamin E Mayer; Lee A McLaughlin; Matthew T McLaughlin; Jenny Molloy; Christopher Mozsary; Jerry L Nadler; Melinee D'Silva; David Ng; David H O'Connor; Jerry E Ongerth; Olayinka Osuolale; Ana Pinharanda; Dennis Plenker; Ravi Ranjan; Michael Rosbash; Assaf Rotem; Jacob Segarra; Stephan Schürer; Scott Sherrill-Mix; Helena Solo-Gabriele; Shaina To; Merly C Vogt; Albert D Yu; Christopher E Mason
Journal:  J Biomol Tech       Date:  2021-09

4.  High-quality RNA improves sensitivity of SARS-CoV-2 detection by colorimetric RT-LAMP.

Authors:  Marta Puigmulé; Mònica Coll; Alexandra Pérez-Serra; Laura López; Ferran Picó; Nuria Neto; Mònica Corona; Mel Lina Pinsach-Abuin; Carles Ferrer-Costa; Maria Buxó; Francesc-Xavier Queralt; Ramon Brugada
Journal:  Exp Biol Med (Maywood)       Date:  2021-12-14

Review 5.  Ultrasensitive Diagnostics for Low-Density Asymptomatic Plasmodium falciparum Infections in Low-Transmission Settings.

Authors:  Kayvan Zainabadi
Journal:  J Clin Microbiol       Date:  2021-03-19       Impact factor: 5.948

6.  Highly-sensitive detection of Salmonella typhi in clinical blood samples by magnetic nanoparticle-based enrichment and in-situ measurement of isothermal amplification of nucleic acids.

Authors:  Avinash Kaur; Arti Kapil; Ravikrishnan Elangovan; Sandeep Jha; Dinesh Kalyanasundaram
Journal:  PLoS One       Date:  2018-03-28       Impact factor: 3.240

7.  Simultaneous Detection of Different Zika Virus Lineages via Molecular Computation in a Point-of-Care Assay.

Authors:  Sanchita Bhadra; Miguel A Saldaña; Hannah Grace Han; Grant L Hughes; Andrew D Ellington
Journal:  Viruses       Date:  2018-12-14       Impact factor: 5.048

8.  Progress in loop-mediated isothermal amplification assay for detection of Schistosoma mansoni DNA: towards a ready-to-use test.

Authors:  J García-Bernalt Diego; P Fernández-Soto; B Crego-Vicente; S Alonso-Castrillejo; B Febrer-Sendra; A Gómez-Sánchez; B Vicente; J López-Abán; A Muro
Journal:  Sci Rep       Date:  2019-10-14       Impact factor: 4.379

Review 9.  Loop-mediated isothermal amplification (LAMP): a versatile technique for detection of micro-organisms.

Authors:  Y-P Wong; S Othman; Y-L Lau; S Radu; H-Y Chee
Journal:  J Appl Microbiol       Date:  2018-02-12       Impact factor: 3.772

10.  Evaluation of the stability of lyophilized loop-mediated isothermal amplification reagents for the detection of Coxiella burnetii.

Authors:  Hua-Wei Chen; Wei-Mei Ching
Journal:  Heliyon       Date:  2017-10-06
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