Literature DB >> 18524393

Rapid detection of HIV-1 by reverse-transcription, loop-mediated isothermal amplification (RT-LAMP).

Kelly A Curtis1, Donna L Rudolph, S Michele Owen.   

Abstract

A rapid, cost-effective diagnostic or confirmatory test for the detection of early HIV-1 infection is highly desired, especially for use in resource-poor or point-of-care settings. The reverse-transcription loop-mediated isothermal amplification (RT-LAMP) technology has been evaluated for the detection of HIV-1 DNA and RNA, using six RT-LAMP primers designed against highly conserved sequences located within the protease and p24 gene regions. Amplification from lab-adapted HIV-1 DNA and RNA was detected as early as 30 min, with maximum sensitivity of 10 and 100 copies per reaction, respectively, reached at 60 min. Comparable sensitivity was observed with extracted nucleic acid from plasma and blood samples of HIV-1-infected individuals. Furthermore, the RT-LAMP procedure was modified for the direct detection of HIV-1 nucleic acid in plasma and blood samples, eliminating the need for an additional nucleic acid extraction step and reducing the overall procedure time to approximately 90 min.

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Year:  2008        PMID: 18524393     DOI: 10.1016/j.jviromet.2008.04.011

Source DB:  PubMed          Journal:  J Virol Methods        ISSN: 0166-0934            Impact factor:   2.014


  87 in total

1.  Development of a loop-mediated isothermal amplification assay for rapid detection of subgroup J avian leukosis virus.

Authors:  Xiaotao Zhang; Ming Liao; Peirong Jiao; Kaijian Luo; Henan Zhang; Tao Ren; Guihong Zhang; Chenggang Xu; Chaoan Xin; Weisheng Cao
Journal:  J Clin Microbiol       Date:  2010-04-07       Impact factor: 5.948

2.  Loop-Mediated Isothermal Amplification (LAMP) for Rapid Detection and Quantification of Dehalococcoides Biomarker Genes in Commercial Reductive Dechlorinating Cultures KB-1 and SDC-9.

Authors:  Yogendra H Kanitkar; Robert D Stedtfeld; Robert J Steffan; Syed A Hashsham; Alison M Cupples
Journal:  Appl Environ Microbiol       Date:  2016-01-08       Impact factor: 4.792

3.  Development of a sensitive loop-mediated isothermal amplification assay that provides specimen-to-result diagnosis of respiratory syncytial virus infection in 30 minutes.

Authors:  James Mahony; Sylvia Chong; David Bulir; Alexandra Ruyter; Ken Mwawasi; Daniel Waltho
Journal:  J Clin Microbiol       Date:  2013-06-12       Impact factor: 5.948

4.  Visual detection of norovirus genogroup II by reverse transcription loop-mediated isothermal amplification with hydroxynaphthol blue dye.

Authors:  Jianming Luo; Ziqian Xu; Kai Nie; Xiong Ding; Li Guan; Ji Wang; Yuying Xian; Xiyang Wu; Xuejun Ma
Journal:  Food Environ Virol       Date:  2014-04-22       Impact factor: 2.778

5.  Development of a reverse transcriptase loop-mediated isothermal amplification (LAMP) assay for the sensitive detection of Leishmania parasites in clinical samples.

Authors:  Emily R Adams; Gerard J Schoone; Al Farazdag Ageed; Sayda El Safi; Henk D F H Schallig
Journal:  Am J Trop Med Hyg       Date:  2010-04       Impact factor: 2.345

6.  Rapid genome detection of Schmallenberg virus and bovine viral diarrhea virus by use of isothermal amplification methods and high-speed real-time reverse transcriptase PCR.

Authors:  Andrea Aebischer; Kerstin Wernike; Bernd Hoffmann; Martin Beer
Journal:  J Clin Microbiol       Date:  2014-03-19       Impact factor: 5.948

7.  Real-Time Detection of HIV-2 by Reverse Transcription-Loop-Mediated Isothermal Amplification.

Authors:  Kelly A Curtis; Philip L Niedzwiedz; Ae S Youngpairoj; Donna L Rudolph; S Michele Owen
Journal:  J Clin Microbiol       Date:  2014-04-30       Impact factor: 5.948

8.  Mechanistic evaluation of the pros and cons of digital RT-LAMP for HIV-1 viral load quantification on a microfluidic device and improved efficiency via a two-step digital protocol.

Authors:  Bing Sun; Feng Shen; Stephanie E McCalla; Jason E Kreutz; Mikhail A Karymov; Rustem F Ismagilov
Journal:  Anal Chem       Date:  2013-01-16       Impact factor: 6.986

9.  Membrane-based, sedimentation-assisted plasma separator for point-of-care applications.

Authors:  Changchun Liu; Michael Mauk; Robert Gross; Frederic D Bushman; Paul H Edelstein; Ronald G Collman; Haim H Bau
Journal:  Anal Chem       Date:  2013-10-25       Impact factor: 6.986

10.  Rapid and sensitive detection of Citrus Bacterial Canker by loop-mediated isothermal amplification combined with simple visual evaluation methods.

Authors:  Luciano A Rigano; María R Marano; Atilio P Castagnaro; Alexandre Morais Do Amaral; Adrian A Vojnov
Journal:  BMC Microbiol       Date:  2010-06-18       Impact factor: 3.605

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