Literature DB >> 34903068

High-quality RNA improves sensitivity of SARS-CoV-2 detection by colorimetric RT-LAMP.

Marta Puigmulé1,2,3, Mònica Coll1, Alexandra Pérez-Serra1, Laura López1, Ferran Picó1, Nuria Neto1, Mònica Corona1, Mel Lina Pinsach-Abuin1, Carles Ferrer-Costa1, Maria Buxó4, Francesc-Xavier Queralt5, Ramon Brugada1,2,3,6.   

Abstract

The global SARS-CoV-2 pandemic requires a rapid, reliable, and user-friendly diagnostic test to help control the spread of the virus. Reverse transcription and quantitative PCR (RT-qPCR) is currently the gold standard method for SARS-CoV-2 detection. Here, we develop a protocol based on reverse transcription loop-mediated isothermal amplification (RT-LAMP) and demonstrate increased sensitivity of this technique using fresh RNA extracts compared to RNA samples subjected to freezing/thawing cycles. We further compare RT-LAMP to RT-qPCR and demonstrate that the RT-LAMP approach has high sensitivity in fresh RNA extracts and can detect positive samples with Ct values between 8 and 35.

Entities:  

Keywords:  RT-LAMP; SARS-CoV-2; high-quality RNA

Mesh:

Substances:

Year:  2021        PMID: 34903068      PMCID: PMC8851528          DOI: 10.1177/15353702211054768

Source DB:  PubMed          Journal:  Exp Biol Med (Maywood)        ISSN: 1535-3699


  17 in total

Review 1.  Loop-mediated isothermal amplification (LAMP): principle, features, and future prospects.

Authors:  Tsugunori Notomi; Yasuyoshi Mori; Norihiro Tomita; Hidetoshi Kanda
Journal:  J Microbiol       Date:  2015-01-04       Impact factor: 3.422

2.  Development of a test kit for visual loop-mediated isothermal amplification of Salmonella in spiked ready-to-eat fruits and vegetables.

Authors:  Jiajia Wan; Jianping Guo; Zhaoxin Lu; Xiaomei Bie; Fengxia Lv; Haizhen Zhao
Journal:  J Microbiol Methods       Date:  2019-12-28       Impact factor: 2.363

3.  Molecular Diagnosis of a Novel Coronavirus (2019-nCoV) Causing an Outbreak of Pneumonia.

Authors:  Daniel K W Chu; Yang Pan; Samuel M S Cheng; Kenrie P Y Hui; Pavithra Krishnan; Yingzhi Liu; Daisy Y M Ng; Carrie K C Wan; Peng Yang; Quanyi Wang; Malik Peiris; Leo L M Poon
Journal:  Clin Chem       Date:  2020-04-01       Impact factor: 8.327

4.  Direct on-the-spot detection of SARS-CoV-2 in patients.

Authors:  Nadav Ben-Assa; Rawi Naddaf; Tal Gefen; Tal Capucha; Haitham Hajjo; Noa Mandelbaum; Lilach Elbaum; Peter Rogov; Daniel A King; Shai Kaplan; Assaf Rotem; Michal Chowers; Moran Szwarcwort-Cohen; Mical Paul; Naama Geva-Zatorsky
Journal:  Exp Biol Med (Maywood)       Date:  2020-07-16

5.  Viral RNA load as determined by cell culture as a management tool for discharge of SARS-CoV-2 patients from infectious disease wards.

Authors:  Bernard La Scola; Marion Le Bideau; Julien Andreani; Van Thuan Hoang; Clio Grimaldier; Philippe Colson; Philippe Gautret; Didier Raoult
Journal:  Eur J Clin Microbiol Infect Dis       Date:  2020-04-27       Impact factor: 3.267

6.  A colorimetric RT-LAMP assay and LAMP-sequencing for detecting SARS-CoV-2 RNA in clinical samples.

Authors:  Viet Loan Dao Thi; Konrad Herbst; Kathleen Boerner; Matthias Meurer; Lukas Pm Kremer; Daniel Kirrmaier; Andrew Freistaedter; Dimitrios Papagiannidis; Carla Galmozzi; Megan L Stanifer; Steeve Boulant; Steffen Klein; Petr Chlanda; Dina Khalid; Isabel Barreto Miranda; Paul Schnitzler; Hans-Georg Kräusslich; Michael Knop; Simon Anders
Journal:  Sci Transl Med       Date:  2020-07-27       Impact factor: 17.956

7.  Rapid detection of novel coronavirus/Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) by reverse transcription-loop-mediated isothermal amplification.

Authors:  Laura E Lamb; Sarah N Bartolone; Elijah Ward; Michael B Chancellor
Journal:  PLoS One       Date:  2020-06-12       Impact factor: 3.240

8.  Saliva is a reliable tool to detect SARS-CoV-2.

Authors:  Lorenzo Azzi; Giulio Carcano; Francesco Gianfagna; Paolo Grossi; Daniela Dalla Gasperina; Angelo Genoni; Mauro Fasano; Fausto Sessa; Lucia Tettamanti; Francesco Carinci; Vittorio Maurino; Agostino Rossi; Angelo Tagliabue; Andreina Baj
Journal:  J Infect       Date:  2020-04-14       Impact factor: 6.072

9.  SARS-CoV-2 RNA Extraction Using Magnetic Beads for Rapid Large-Scale Testing by RT-qPCR and RT-LAMP.

Authors:  Steffen Klein; Thorsten G Müller; Dina Khalid; Vera Sonntag-Buck; Anke-Mareil Heuser; Bärbel Glass; Matthias Meurer; Ivonne Morales; Angelika Schillak; Andrew Freistaedter; Ina Ambiel; Sophie L Winter; Liv Zimmermann; Tamara Naumoska; Felix Bubeck; Daniel Kirrmaier; Stephanie Ullrich; Isabel Barreto Miranda; Simon Anders; Dirk Grimm; Paul Schnitzler; Michael Knop; Hans-Georg Kräusslich; Viet Loan Dao Thi; Kathleen Börner; Petr Chlanda
Journal:  Viruses       Date:  2020-08-07       Impact factor: 5.048

10.  Saliva or Nasopharyngeal Swab Specimens for Detection of SARS-CoV-2.

Authors:  Anne L Wyllie; John Fournier; Arnau Casanovas-Massana; Melissa Campbell; Maria Tokuyama; Pavithra Vijayakumar; Joshua L Warren; Bertie Geng; M Catherine Muenker; Adam J Moore; Chantal B F Vogels; Mary E Petrone; Isabel M Ott; Peiwen Lu; Arvind Venkataraman; Alice Lu-Culligan; Jonathan Klein; Rebecca Earnest; Michael Simonov; Rupak Datta; Ryan Handoko; Nida Naushad; Lorenzo R Sewanan; Jordan Valdez; Elizabeth B White; Sarah Lapidus; Chaney C Kalinich; Xiaodong Jiang; Daniel J Kim; Eriko Kudo; Melissa Linehan; Tianyang Mao; Miyu Moriyama; Ji E Oh; Annsea Park; Julio Silva; Eric Song; Takehiro Takahashi; Manabu Taura; Orr-El Weizman; Patrick Wong; Yexin Yang; Santos Bermejo; Camila D Odio; Saad B Omer; Charles S Dela Cruz; Shelli Farhadian; Richard A Martinello; Akiko Iwasaki; Nathan D Grubaugh; Albert I Ko
Journal:  N Engl J Med       Date:  2020-08-28       Impact factor: 176.079

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