Literature DB >> 28230846

Best practices in data analysis and sharing in neuroimaging using MRI.

Thomas E Nichols1, Samir Das2,3, Simon B Eickhoff4,5, Alan C Evans2,3, Tristan Glatard2,6, Michael Hanke7,8, Nikolaus Kriegeskorte9, Michael P Milham10,11, Russell A Poldrack12, Jean-Baptiste Poline13, Erika Proal14, Bertrand Thirion15, David C Van Essen16, Tonya White17, B T Thomas Yeo18.   

Abstract

Given concerns about the reproducibility of scientific findings, neuroimaging must define best practices for data analysis, results reporting, and algorithm and data sharing to promote transparency, reliability and collaboration. We describe insights from developing a set of recommendations on behalf of the Organization for Human Brain Mapping and identify barriers that impede these practices, including how the discipline must change to fully exploit the potential of the world's neuroimaging data.

Entities:  

Mesh:

Year:  2017        PMID: 28230846      PMCID: PMC5685169          DOI: 10.1038/nn.4500

Source DB:  PubMed          Journal:  Nat Neurosci        ISSN: 1097-6256            Impact factor:   24.884


  20 in total

1.  Reproducible research in computational science.

Authors:  Roger D Peng
Journal:  Science       Date:  2011-12-02       Impact factor: 47.728

Review 2.  Circular analysis in systems neuroscience: the dangers of double dipping.

Authors:  Nikolaus Kriegeskorte; W Kyle Simmons; Patrick S F Bellgowan; Chris I Baker
Journal:  Nat Neurosci       Date:  2009-05       Impact factor: 24.884

3.  LD Score regression distinguishes confounding from polygenicity in genome-wide association studies.

Authors:  Brendan K Bulik-Sullivan; Po-Ru Loh; Hilary K Finucane; Stephan Ripke; Jian Yang; Nick Patterson; Mark J Daly; Alkes L Price; Benjamin M Neale
Journal:  Nat Genet       Date:  2015-02-02       Impact factor: 38.330

4.  Use of electric field sensors for recording respiration, heart rate, and stereotyped motor behaviors in the rodent home cage.

Authors:  Donald J Noble; Camden J MacDowell; Michael L McKinnon; Tamra I Neblett; William N Goolsby; Shawn Hochman
Journal:  J Neurosci Methods       Date:  2016-12-16       Impact factor: 2.390

Review 5.  The Human Connectome Project's neuroimaging approach.

Authors:  Matthew F Glasser; Stephen M Smith; Daniel S Marcus; Jesper L R Andersson; Edward J Auerbach; Timothy E J Behrens; Timothy S Coalson; Michael P Harms; Mark Jenkinson; Steen Moeller; Emma C Robinson; Stamatios N Sotiropoulos; Junqian Xu; Essa Yacoub; Kamil Ugurbil; David C Van Essen
Journal:  Nat Neurosci       Date:  2016-08-26       Impact factor: 24.884

6.  Frontoparietal representations of task context support the flexible control of goal-directed cognition.

Authors:  Michael L Waskom; Dharshan Kumaran; Alan M Gordon; Jesse Rissman; Anthony D Wagner
Journal:  J Neurosci       Date:  2014-08-06       Impact factor: 6.167

7.  Making data sharing work: the FCP/INDI experience.

Authors:  Maarten Mennes; Bharat B Biswal; F Xavier Castellanos; Michael P Milham
Journal:  Neuroimage       Date:  2012-10-30       Impact factor: 6.556

8.  PSYCHOLOGY. Estimating the reproducibility of psychological science.

Authors: 
Journal:  Science       Date:  2015-08-28       Impact factor: 47.728

9.  Adolescence is associated with genomically patterned consolidation of the hubs of the human brain connectome.

Authors:  Kirstie J Whitaker; Petra E Vértes; Rafael Romero-Garcia; František Váša; Michael Moutoussis; Gita Prabhu; Nikolaus Weiskopf; Martina F Callaghan; Konrad Wagstyl; Timothy Rittman; Roger Tait; Cinly Ooi; John Suckling; Becky Inkster; Peter Fonagy; Raymond J Dolan; Peter B Jones; Ian M Goodyer; Edward T Bullmore
Journal:  Proc Natl Acad Sci U S A       Date:  2016-07-25       Impact factor: 11.205

10.  Why most published research findings are false.

Authors:  John P A Ioannidis
Journal:  PLoS Med       Date:  2005-08-30       Impact factor: 11.613

View more
  184 in total

1.  Common functional networks in the mouse brain revealed by multi-centre resting-state fMRI analysis.

Authors:  Joanes Grandjean; Carola Canella; Cynthia Anckaerts; Gülebru Ayrancı; Salma Bougacha; Thomas Bienert; David Buehlmann; Ludovico Coletta; Daniel Gallino; Natalia Gass; Clément M Garin; Nachiket Abhay Nadkarni; Neele S Hübner; Meltem Karatas; Yuji Komaki; Silke Kreitz; Francesca Mandino; Anna E Mechling; Chika Sato; Katja Sauer; Disha Shah; Sandra Strobelt; Norio Takata; Isabel Wank; Tong Wu; Noriaki Yahata; Ling Yun Yeow; Yohan Yee; Ichio Aoki; M Mallar Chakravarty; Wei-Tang Chang; Marc Dhenain; Dominik von Elverfeldt; Laura-Adela Harsan; Andreas Hess; Tianzi Jiang; Georgios A Keliris; Jason P Lerch; Andreas Meyer-Lindenberg; Hideyuki Okano; Markus Rudin; Alexander Sartorius; Annemie Van der Linden; Marleen Verhoye; Wolfgang Weber-Fahr; Nicole Wenderoth; Valerio Zerbi; Alessandro Gozzi
Journal:  Neuroimage       Date:  2019-10-12       Impact factor: 6.556

2.  The Constrained Network-Based Statistic: A New Level of Inference for Neuroimaging.

Authors:  Stephanie Noble; Dustin Scheinost
Journal:  Med Image Comput Comput Assist Interv       Date:  2020-09-29

Review 3.  Ten simple rules for neuroimaging meta-analysis.

Authors:  Veronika I Müller; Edna C Cieslik; Angela R Laird; Peter T Fox; Joaquim Radua; David Mataix-Cols; Christopher R Tench; Tal Yarkoni; Thomas E Nichols; Peter E Turkeltaub; Tor D Wager; Simon B Eickhoff
Journal:  Neurosci Biobehav Rev       Date:  2017-11-24       Impact factor: 8.989

4.  Head motion: the dirty little secret of neuroimaging in psychiatry

Authors:  Carolina Makowski; Martin Lepage; Alan C. Evans
Journal:  J Psychiatry Neurosci       Date:  2019-01-01       Impact factor: 6.186

5.  Good practice in food-related neuroimaging.

Authors:  Paul A M Smeets; Alain Dagher; Todd A Hare; Stephanie Kullmann; Laura N van der Laan; Russell A Poldrack; Hubert Preissl; Dana Small; Eric Stice; Maria G Veldhuizen
Journal:  Am J Clin Nutr       Date:  2019-03-01       Impact factor: 7.045

Review 6.  Towards a Universal Taxonomy of Macro-scale Functional Human Brain Networks.

Authors:  Lucina Q Uddin; B T Thomas Yeo; R Nathan Spreng
Journal:  Brain Topogr       Date:  2019-11-09       Impact factor: 3.020

Review 7.  The vast potential and bright future of neuroimaging.

Authors:  Max Wintermark; Rivka Colen; Christopher T Whitlow; Greg Zaharchuk
Journal:  Br J Radiol       Date:  2018-06-06       Impact factor: 3.039

8.  Cluster failure or power failure? Evaluating sensitivity in cluster-level inference.

Authors:  Stephanie Noble; Dustin Scheinost; R Todd Constable
Journal:  Neuroimage       Date:  2019-12-15       Impact factor: 6.556

9.  Altered neural signatures of interoception in multiple sclerosis.

Authors:  Paula C Salamone; Sol Esteves; Vladimiro J Sinay; Indira García-Cordero; Sofía Abrevaya; Blas Couto; Federico Adolfi; Miguel Martorell; Agustín Petroni; Adrián Yoris; Kathya Torquati; Florencia Alifano; Agustina Legaz; Fátima P Cassará; Diana Bruno; Andrew H Kemp; Eduar Herrera; Adolfo M García; Agustín Ibáñez; Lucas Sedeño
Journal:  Hum Brain Mapp       Date:  2018-08-04       Impact factor: 5.038

Review 10.  Practical recommendations to conduct a neuroimaging meta-analysis for neuropsychiatric disorders.

Authors:  Masoud Tahmasian; Amir A Sepehry; Fateme Samea; Tina Khodadadifar; Zahra Soltaninejad; Nooshin Javaheripour; Habibolah Khazaie; Mojtaba Zarei; Simon B Eickhoff; Claudia R Eickhoff
Journal:  Hum Brain Mapp       Date:  2019-08-04       Impact factor: 5.038

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.