Literature DB >> 33870336

The Constrained Network-Based Statistic: A New Level of Inference for Neuroimaging.

Stephanie Noble1, Dustin Scheinost1,2,3,4,5.   

Abstract

Neuroimaging research aimed at dissecting the network organization of the brain is poised to flourish under major initiatives, but converging evidence suggests more accurate inferential procedures are needed to promote discovery. Inference is typically performed at the cluster level with a network-based statistic (NBS) that boosts power by leveraging known dependence within the local neighborhood. However, existing NBS methods overlook another important form of dependence-shared membership in large-scale brain networks. Here, we propose a new level of inference that pools information within predefined large-scale networks: the Constrained Network-Based Statistic (cNBS). We evaluated sensitivity and specificity of cNBS against existing standard NBS and threshold-free NBS by resampling task data from the largest openly available fMRI database: the Human Connectome Project. cNBS was most sensitive to effect sizes below medium, which accounts for the majority of ground truth effects. In contrast, threshold-free NBS was most sensitive to higher effect sizes. Ground truth maps showed grouping of effects within large-scale networks, supporting the relevance of cNBS. All methods controlled FWER as intended. In summary, cNBS is a promising new level of inference for promoting more valid inference, a critical step towards more reproducible discovery in neuroscience.

Entities:  

Keywords:  Benchmarking; Network-based statistic; fMRI

Year:  2020        PMID: 33870336      PMCID: PMC8052680          DOI: 10.1007/978-3-030-59728-3_45

Source DB:  PubMed          Journal:  Med Image Comput Comput Assist Interv


  17 in total

1.  Network-based statistic: identifying differences in brain networks.

Authors:  Andrew Zalesky; Alex Fornito; Edward T Bullmore
Journal:  Neuroimage       Date:  2010-06-25       Impact factor: 6.556

2.  Threshold-free cluster enhancement: addressing problems of smoothing, threshold dependence and localisation in cluster inference.

Authors:  Stephen M Smith; Thomas E Nichols
Journal:  Neuroimage       Date:  2008-04-11       Impact factor: 6.556

3.  Cluster failure or power failure? Evaluating sensitivity in cluster-level inference.

Authors:  Stephanie Noble; Dustin Scheinost; R Todd Constable
Journal:  Neuroimage       Date:  2019-12-15       Impact factor: 6.556

4.  Cluster-extent based thresholding in fMRI analyses: pitfalls and recommendations.

Authors:  Choong-Wan Woo; Anjali Krishnan; Tor D Wager
Journal:  Neuroimage       Date:  2014-01-08       Impact factor: 6.556

5.  Groupwise whole-brain parcellation from resting-state fMRI data for network node identification.

Authors:  X Shen; F Tokoglu; X Papademetris; R T Constable
Journal:  Neuroimage       Date:  2013-06-04       Impact factor: 6.556

Review 6.  Best practices in data analysis and sharing in neuroimaging using MRI.

Authors:  Thomas E Nichols; Samir Das; Simon B Eickhoff; Alan C Evans; Tristan Glatard; Michael Hanke; Nikolaus Kriegeskorte; Michael P Milham; Russell A Poldrack; Jean-Baptiste Poline; Erika Proal; Bertrand Thirion; David C Van Essen; Tonya White; B T Thomas Yeo
Journal:  Nat Neurosci       Date:  2017-02-23       Impact factor: 24.884

Review 7.  Scanning the horizon: towards transparent and reproducible neuroimaging research.

Authors:  Russell A Poldrack; Chris I Baker; Joke Durnez; Krzysztof J Gorgolewski; Paul M Matthews; Marcus R Munafò; Thomas E Nichols; Jean-Baptiste Poline; Edward Vul; Tal Yarkoni
Journal:  Nat Rev Neurosci       Date:  2017-01-05       Impact factor: 34.870

8.  Permutation inference for the general linear model.

Authors:  Anderson M Winkler; Gerard R Ridgway; Matthew A Webster; Stephen M Smith; Thomas E Nichols
Journal:  Neuroimage       Date:  2014-02-11       Impact factor: 6.556

9.  Influences on the Test-Retest Reliability of Functional Connectivity MRI and its Relationship with Behavioral Utility.

Authors:  Stephanie Noble; Marisa N Spann; Fuyuze Tokoglu; Xilin Shen; R Todd Constable; Dustin Scheinost
Journal:  Cereb Cortex       Date:  2017-11-01       Impact factor: 5.357

10.  Statistical inference in brain graphs using threshold-free network-based statistics.

Authors:  Hugo C Baggio; Alexandra Abos; Barbara Segura; Anna Campabadal; Anna Garcia-Diaz; Carme Uribe; Yaroslau Compta; Maria Jose Marti; Francesc Valldeoriola; Carme Junque
Journal:  Hum Brain Mapp       Date:  2018-02-15       Impact factor: 5.038

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  2 in total

1.  Brain-phenotype models fail for individuals who defy sample stereotypes.

Authors:  Abigail S Greene; Xilin Shen; Stephanie Noble; Corey Horien; C Alice Hahn; Jagriti Arora; Fuyuze Tokoglu; Marisa N Spann; Carmen I Carrión; Daniel S Barron; Gerard Sanacora; Vinod H Srihari; Scott W Woods; Dustin Scheinost; R Todd Constable
Journal:  Nature       Date:  2022-08-24       Impact factor: 69.504

2.  Improving power in functional magnetic resonance imaging by moving beyond cluster-level inference.

Authors:  Stephanie Noble; Amanda F Mejia; Andrew Zalesky; Dustin Scheinost
Journal:  Proc Natl Acad Sci U S A       Date:  2022-08-04       Impact factor: 12.779

  2 in total

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