Literature DB >> 23123682

Making data sharing work: the FCP/INDI experience.

Maarten Mennes1, Bharat B Biswal, F Xavier Castellanos, Michael P Milham.   

Abstract

Over a decade ago, the fMRI Data Center (fMRIDC) pioneered open-access data sharing in the task-based functional neuroimaging community. Well ahead of its time, the fMRIDC effort encountered logistical, sociocultural and funding barriers that impeded the field-wise instantiation of open-access data sharing. In 2009, ambitions for open-access data sharing were revived in the resting state functional MRI community in the form of two grassroots initiatives: the 1000 Functional Connectomes Project (FCP) and its successor, the International Neuroimaging Datasharing Initiative (INDI). Beyond providing open access to thousands of clinical and non-clinical imaging datasets, the FCP and INDI have demonstrated the feasibility of large-scale data aggregation for hypothesis generation and testing. Yet, the success of the FCP and INDI should not be confused with widespread embracement of open-access data sharing. Reminiscent of the challenges faced by fMRIDC, key controversies persist and include participant privacy, the role of informatics, and the logistical and cultural challenges of establishing an open science ethos. We discuss the FCP and INDI in the context of these challenges, highlighting the promise of current initiatives and suggesting solutions for possible pitfalls.
Copyright © 2012 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  Database; Informatics; Neuroinformatics; Open science; Open-access; R-fMRI; fMRI

Mesh:

Year:  2012        PMID: 23123682      PMCID: PMC3959872          DOI: 10.1016/j.neuroimage.2012.10.064

Source DB:  PubMed          Journal:  Neuroimage        ISSN: 1053-8119            Impact factor:   6.556


  43 in total

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Authors:  S H Koslow
Journal:  Nat Neurosci       Date:  2000-09       Impact factor: 24.884

2.  Share and share alike.

Authors:  David N Kennedy
Journal:  Neuroinformatics       Date:  2003

Review 3.  The Health Insurance Portability and Accountability Act Privacy Rule: a practical guide for researchers.

Authors:  Patrick P Gunn; Allen M Fremont; Melissa Bottrell; Lisa R Shugarman; Jolene Galegher; Tora Bikson
Journal:  Med Care       Date:  2004-04       Impact factor: 2.983

4.  Open your minds and share your results.

Authors:  Geoffrey Boulton
Journal:  Nature       Date:  2012-06-27       Impact factor: 49.962

5.  The Extensible Neuroimaging Archive Toolkit: an informatics platform for managing, exploring, and sharing neuroimaging data.

Authors:  Daniel S Marcus; Timothy R Olsen; Mohana Ramaratnam; Randy L Buckner
Journal:  Neuroinformatics       Date:  2007

6.  The autism diagnostic observation schedule-generic: a standard measure of social and communication deficits associated with the spectrum of autism.

Authors:  C Lord; S Risi; L Lambrecht; E H Cook; B L Leventhal; P C DiLavore; A Pickles; M Rutter
Journal:  J Autism Dev Disord       Date:  2000-06

7.  Lifetime prevalence and age-of-onset distributions of DSM-IV disorders in the National Comorbidity Survey Replication.

Authors:  Ronald C Kessler; Patricia Berglund; Olga Demler; Robert Jin; Kathleen R Merikangas; Ellen E Walters
Journal:  Arch Gen Psychiatry       Date:  2005-06

8.  Would the field of cognitive neuroscience be advanced by sharing functional MRI data?

Authors:  Kristina M Visscher; Daniel H Weissman
Journal:  BMC Med       Date:  2011-04-08       Impact factor: 8.775

9.  Informatics and data mining tools and strategies for the human connectome project.

Authors:  Daniel S Marcus; John Harwell; Timothy Olsen; Michael Hodge; Matthew F Glasser; Fred Prior; Mark Jenkinson; Timothy Laumann; Sandra W Curtiss; David C Van Essen
Journal:  Front Neuroinform       Date:  2011-06-27       Impact factor: 4.081

10.  Data sharing: not as simple as it seems.

Authors:  Neil Pearce; Allan H Smith
Journal:  Environ Health       Date:  2011-12-21       Impact factor: 5.984

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  98 in total

1.  Transfer learning improves resting-state functional connectivity pattern analysis using convolutional neural networks.

Authors:  Pál Vakli; Regina J Deák-Meszlényi; Petra Hermann; Zoltán Vidnyánszky
Journal:  Gigascience       Date:  2018-12-01       Impact factor: 6.524

2.  Graphical neuroimaging informatics: application to Alzheimer's disease.

Authors:  John Darrell Van Horn; Ian Bowman; Shantanu H Joshi; Vaughan Greer
Journal:  Brain Imaging Behav       Date:  2014-06       Impact factor: 3.978

3.  The Philadelphia Neurodevelopmental Cohort: A publicly available resource for the study of normal and abnormal brain development in youth.

Authors:  Theodore D Satterthwaite; John J Connolly; Kosha Ruparel; Monica E Calkins; Chad Jackson; Mark A Elliott; David R Roalf; Ryan Hopson; Karthik Prabhakaran; Meckenzie Behr; Haijun Qiu; Frank D Mentch; Rosetta Chiavacci; Patrick M A Sleiman; Ruben C Gur; Hakon Hakonarson; Raquel E Gur
Journal:  Neuroimage       Date:  2015-03-31       Impact factor: 6.556

Review 4.  Making big data open: data sharing in neuroimaging.

Authors:  Russell A Poldrack; Krzysztof J Gorgolewski
Journal:  Nat Neurosci       Date:  2014-10-28       Impact factor: 24.884

5.  A Roadmap for Foundational Research on Artificial Intelligence in Medical Imaging: From the 2018 NIH/RSNA/ACR/The Academy Workshop.

Authors:  Curtis P Langlotz; Bibb Allen; Bradley J Erickson; Jayashree Kalpathy-Cramer; Keith Bigelow; Tessa S Cook; Adam E Flanders; Matthew P Lungren; David S Mendelson; Jeffrey D Rudie; Ge Wang; Krishna Kandarpa
Journal:  Radiology       Date:  2019-04-16       Impact factor: 11.105

6.  Inhibitory control mediates a negative relationship between body mass index and intelligence: A neurocognitive investigation.

Authors:  L Faul; N D Fogleman; K M Mattingly; B E Depue
Journal:  Cogn Affect Behav Neurosci       Date:  2019-04       Impact factor: 3.282

7.  The Healthy Brain Network Serial Scanning Initiative: a resource for evaluating inter-individual differences and their reliabilities across scan conditions and sessions.

Authors:  David O'Connor; Natan Vega Potler; Meagan Kovacs; Ting Xu; Lei Ai; John Pellman; Tamara Vanderwal; Lucas C Parra; Samantha Cohen; Satrajit Ghosh; Jasmine Escalera; Natalie Grant-Villegas; Yael Osman; Anastasia Bui; R Cameron Craddock; Michael P Milham
Journal:  Gigascience       Date:  2017-02-01       Impact factor: 6.524

Review 8.  Collaborating and sharing data in epilepsy research.

Authors:  Joost B Wagenaar; Gregory A Worrell; Zachary Ives; Matthias Dümpelmann; Dümpelmann Matthias; Brian Litt; Andreas Schulze-Bonhage
Journal:  J Clin Neurophysiol       Date:  2015-06       Impact factor: 2.177

9.  Commentary: The best and worst of times--the prospects for magnetic resonance imaging (MRI) of developmental psychopathologies--a commentary on Horga et al. (2014).

Authors:  Francisco X Castellanos; Yuliya Yoncheva
Journal:  J Child Psychol Psychiatry       Date:  2014-06       Impact factor: 8.982

10.  A comprehensive assessment of regional variation in the impact of head micromovements on functional connectomics.

Authors:  Chao-Gan Yan; Brian Cheung; Clare Kelly; Stan Colcombe; R Cameron Craddock; Adriana Di Martino; Qingyang Li; Xi-Nian Zuo; F Xavier Castellanos; Michael P Milham
Journal:  Neuroimage       Date:  2013-03-15       Impact factor: 6.556

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