Literature DB >> 28171730

Formal Reduction Potentials of Difluorotyrosine and Trifluorotyrosine Protein Residues: Defining the Thermodynamics of Multistep Radical Transfer.

Kanchana R Ravichandran, Allan B Zong1, Alexander T Taguchi, Daniel G Nocera2, JoAnne Stubbe, Cecilia Tommos1.   

Abstract

Redox-active tyrosines (Ys) play essential roles in enzymes involved in primary metabolism including energy transduction and deoxynucleotide production catalyzed by ribonucleotide reductases (RNRs). Thermodynamic characterization of Ys in solution and in proteins remains a challenge due to the high reduction potentials involved and the reactive nature of the radical state. The structurally characterized α3Y model protein has allowed the first determination of formal reduction potentials (E°') for a Y residing within a protein (Berry, B. W.; Martı́nez-Rivera, M. C.; Tommos, C. Proc. Natl. Acad. Sci. U. S. A. 2012, 109, 9739-9743). Using Schultz's technology, a series of fluorotyrosines (FnY, n = 2 or 3) was site-specifically incorporated into α3Y. The global protein properties of the resulting α3(3,5)F2Y, α3(2,3,5)F3Y, α3(2,3)F2Y and α3(2,3,6)F3Y variants are essentially identical to those of α3Y. A protein film square-wave voltammetry approach was developed to successfully obtain reversible voltammograms and E°'s of the very high-potential α3FnY proteins. E°'(pH 5.5; α3FnY(O•/OH)) spans a range of 1040 ± 3 mV to 1200 ± 3 mV versus the normal hydrogen electrode. This is comparable to the potentials of the most oxidizing redox cofactors in nature. The FnY analogues, and the ability to site-specifically incorporate them into any protein of interest, provide new tools for mechanistic studies on redox-active Ys in proteins and on functional and aberrant hole-transfer reactions in metallo-enzymes. The former application is illustrated here by using the determined α3FnY ΔE°'s to model the thermodynamics of radical-transfer reactions in FnY-RNRs and to experimentally test and support the key prediction made.

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Year:  2017        PMID: 28171730      PMCID: PMC5651514          DOI: 10.1021/jacs.6b11011

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  78 in total

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Journal:  Science       Date:  1992-12-11       Impact factor: 47.728

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Authors:  Qing-Hong Dai; Cecilia Tommos; Ernesto J Fuentes; Margareta R A Blomberg; P Leslie Dutton; A Joshua Wand
Journal:  J Am Chem Soc       Date:  2002-09-18       Impact factor: 15.419

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Journal:  Nature       Date:  1992-02-27       Impact factor: 49.962

Review 8.  Radical initiation in the class I ribonucleotide reductase: long-range proton-coupled electron transfer?

Authors:  JoAnne Stubbe; Daniel G Nocera; Cyril S Yee; Michelle C Y Chang
Journal:  Chem Rev       Date:  2003-06       Impact factor: 60.622

9.  Stabilization of coiled-coil peptide domains by introduction of trifluoroleucine.

Authors:  Y Tang; G Ghirlanda; N Vaidehi; J Kua; D T Mainz; W A Goddard III; W F DeGrado; D A Tirrell
Journal:  Biochemistry       Date:  2001-03-06       Impact factor: 3.162

10.  Regioselective conversion of arylboronic acids to phenols and subsequent coupling to symmetrical diaryl ethers.

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Journal:  J Org Chem       Date:  2001-01-26       Impact factor: 4.354

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  15 in total

1.  Glutamate 350 Plays an Essential Role in Conformational Gating of Long-Range Radical Transport in Escherichia coli Class Ia Ribonucleotide Reductase.

Authors:  Kanchana Ravichandran; Ellen C Minnihan; Qinghui Lin; Kenichi Yokoyama; Alexander T Taguchi; Jimin Shao; Daniel G Nocera; JoAnne Stubbe
Journal:  Biochemistry       Date:  2017-02-02       Impact factor: 3.162

2.  Selenocysteine Substitution in a Class I Ribonucleotide Reductase.

Authors:  Brandon L Greene; JoAnne Stubbe; Daniel G Nocera
Journal:  Biochemistry       Date:  2019-12-06       Impact factor: 3.162

Review 3.  Ribonucleotide Reductases: Structure, Chemistry, and Metabolism Suggest New Therapeutic Targets.

Authors:  Brandon L Greene; Gyunghoon Kang; Chang Cui; Marina Bennati; Daniel G Nocera; Catherine L Drennan; JoAnne Stubbe
Journal:  Annu Rev Biochem       Date:  2020-06-20       Impact factor: 23.643

4.  Tuning Radical Relay Residues by Proton Management Rescues Protein Electron Hopping.

Authors:  Estella F Yee; Boris Dzikovski; Brian R Crane
Journal:  J Am Chem Soc       Date:  2019-10-28       Impact factor: 15.419

5.  Glutamate 52-β at the α/β subunit interface of Escherichia coli class Ia ribonucleotide reductase is essential for conformational gating of radical transfer.

Authors:  Qinghui Lin; Mackenzie J Parker; Alexander T Taguchi; Kanchana Ravichandran; Albert Kim; Gyunghoon Kang; Jimin Shao; Catherine L Drennan; JoAnne Stubbe
Journal:  J Biol Chem       Date:  2017-04-04       Impact factor: 5.157

6.  Photochemical Rescue of a Conformationally Inactivated Ribonucleotide Reductase.

Authors:  Brandon L Greene; JoAnne Stubbe; Daniel G Nocera
Journal:  J Am Chem Soc       Date:  2018-11-12       Impact factor: 15.419

7.  Pourbaix Diagram, Proton-Coupled Electron Transfer, and Decay Kinetics of a Protein Tryptophan Radical: Comparing the Redox Properties of W32 and Y32 Generated Inside the Structurally Characterized α3W and α3Y Proteins.

Authors:  Starla D Glover; Robin Tyburski; Li Liang; Cecilia Tommos; Leif Hammarström
Journal:  J Am Chem Soc       Date:  2017-12-19       Impact factor: 15.419

8.  Properties of Site-Specifically Incorporated 3-Aminotyrosine in Proteins To Study Redox-Active Tyrosines: Escherichia coli Ribonucleotide Reductase as a Paradigm.

Authors:  Wankyu Lee; Müge Kasanmascheff; Michael Huynh; Anthony Quartararo; Cyrille Costentin; Isabel Bejenke; Daniel G Nocera; Marina Bennati; Cecilia Tommos; JoAnne Stubbe
Journal:  Biochemistry       Date:  2018-04-17       Impact factor: 3.162

9.  Glutamate Mediates Proton-Coupled Electron Transfer Between Tyrosines 730 and 731 in Escherichia coli Ribonucleotide Reductase.

Authors:  Clorice R Reinhardt; Elvira R Sayfutyarova; Jiayun Zhong; Sharon Hammes-Schiffer
Journal:  J Am Chem Soc       Date:  2021-04-15       Impact factor: 15.419

10.  Computing Proton-Coupled Redox Potentials of Fluorotyrosines in a Protein Environment.

Authors:  Clorice R Reinhardt; Raquel Sequeira; Cecilia Tommos; Sharon Hammes-Schiffer
Journal:  J Phys Chem B       Date:  2020-12-30       Impact factor: 2.991

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