Literature DB >> 32569524

Ribonucleotide Reductases: Structure, Chemistry, and Metabolism Suggest New Therapeutic Targets.

Brandon L Greene1,2,3, Gyunghoon Kang2, Chang Cui2,3, Marina Bennati4,5, Daniel G Nocera3, Catherine L Drennan2,6,7, JoAnne Stubbe2,6.   

Abstract

Ribonucleotide reductases (RNRs) catalyze the de novo conversion of nucleotides to deoxynucleotides in all organisms, controlling their relative ratios and abundance. In doing so, they play an important role in fidelity of DNA replication and repair. RNRs' central role in nucleic acid metabolism has resulted in five therapeutics that inhibit human RNRs. In this review, we discuss the structural, dynamic, and mechanistic aspects of RNR activity and regulation, primarily for the human and Escherichia coli class Ia enzymes. The unusual radical-based organic chemistry of nucleotide reduction, the inorganic chemistry of the essential metallo-cofactor biosynthesis/maintenance, the transport of a radical over a long distance, and the dynamics of subunit interactions all present distinct entry points toward RNR inhibition that are relevant for drug discovery. We describe the current mechanistic understanding of small molecules that target different elements of RNR function, including downstream pathways that lead to cell cytotoxicity. We conclude by summarizing novel and emergent RNR targeting motifs for cancer and antibiotic therapeutics.

Entities:  

Keywords:  mechanisms; ribonucleotide reductases; structures; therapeutics

Mesh:

Substances:

Year:  2020        PMID: 32569524      PMCID: PMC7316142          DOI: 10.1146/annurev-biochem-013118-111843

Source DB:  PubMed          Journal:  Annu Rev Biochem        ISSN: 0066-4154            Impact factor:   23.643


  113 in total

1.  High-field EPR detection of a disulfide radical anion in the reduction of cytidine 5'-diphosphate by the E441Q R1 mutant of Escherichia coli ribonucleotide reductase.

Authors:  C C Lawrence; M Bennati; H V Obias; G Bar; R G Griffin; J Stubbe
Journal:  Proc Natl Acad Sci U S A       Date:  1999-08-03       Impact factor: 11.205

Review 2.  Opportunities and challenges for the development of covalent chemical immunomodulators.

Authors:  Keriann M Backus; Jian Cao; Sean M Maddox
Journal:  Bioorg Med Chem       Date:  2019-06-05       Impact factor: 3.641

3.  The Novel Ribonucleotide Reductase Inhibitor COH29 Inhibits DNA Repair In Vitro.

Authors:  Mei-Chuan Chen; Bingsen Zhou; Keqiang Zhang; Yate-Ching Yuan; Frank Un; Shuya Hu; Chih-Ming Chou; Chun-Han Chen; Jun Wu; Yan Wang; Xiyong Liu; D Lynne Smith; Hongzhi Li; Zheng Liu; Charles D Warden; Leila Su; Linda H Malkas; Young Min Chung; Mickey C-T Hu; Yun Yen
Journal:  Mol Pharmacol       Date:  2015-03-26       Impact factor: 4.436

4.  Gemcitabine and Chk1 Inhibitor AZD7762 Synergistically Suppress the Growth of Lkb1-Deficient Lung Adenocarcinoma.

Authors:  Yan Liu; Yuyang Li; Xiaoen Wang; Feiyang Liu; Peng Gao; Max M Quinn; Fei Li; Ashley A Merlino; Cyril Benes; Qingsong Liu; Nathanael S Gray; Kwok-Kin Wong
Journal:  Cancer Res       Date:  2017-07-28       Impact factor: 12.701

5.  Novel mutator mutants of E. coli nrdAB ribonucleotide reductase: insight into allosteric regulation and control of mutation rates.

Authors:  Deepti Ahluwalia; Rachelle J Bienstock; Roel M Schaaper
Journal:  DNA Repair (Amst)       Date:  2012-03-13

6.  Structure of the nitrogen-centered radical formed during inactivation of E. coli ribonucleotide reductase by 2'-azido-2'-deoxyuridine-5'-diphosphate: trapping of the 3'-ketonucleotide.

Authors:  Jörg Fritscher; Erin Artin; Stanislaw Wnuk; Galit Bar; John H Robblee; Sylwia Kacprzak; Martin Kaupp; Robert G Griffin; Marina Bennati; JoAnne Stubbe
Journal:  J Am Chem Soc       Date:  2005-06-01       Impact factor: 15.419

Review 7.  The manganese(IV)/iron(III) cofactor of Chlamydia trachomatis ribonucleotide reductase: structure, assembly, radical initiation, and evolution.

Authors:  J Martin Bollinger; Wei Jiang; Michael T Green; Carsten Krebs
Journal:  Curr Opin Struct Biol       Date:  2008-11-27       Impact factor: 6.809

8.  A potent peptidomimetic inhibitor of HSV ribonucleotide reductase with antiviral activity in vivo.

Authors:  M Liuzzi; R Déziel; N Moss; P Beaulieu; A M Bonneau; C Bousquet; J G Chafouleas; M Garneau; J Jaramillo; R L Krogsrud
Journal:  Nature       Date:  1994-12-15       Impact factor: 49.962

9.  Tangled up in knots: structures of inactivated forms of E. coli class Ia ribonucleotide reductase.

Authors:  Christina M Zimanyi; Nozomi Ando; Edward J Brignole; Francisco J Asturias; Joanne Stubbe; Catherine L Drennan
Journal:  Structure       Date:  2012-06-21       Impact factor: 5.006

10.  Ribonucleotide reductase inhibition by metal complexes of Triapine (3-aminopyridine-2-carboxaldehyde thiosemicarbazone): a combined experimental and theoretical study.

Authors:  Ana Popović-Bijelić; Christian R Kowol; Maria E S Lind; Jinghui Luo; Fahmi Himo; Eva A Enyedy; Vladimir B Arion; Astrid Gräslund
Journal:  J Inorg Biochem       Date:  2011-07-31       Impact factor: 4.155

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  29 in total

1.  Gated Proton Release during Radical Transfer at the Subunit Interface of Ribonucleotide Reductase.

Authors:  Chang Cui; Brandon L Greene; Gyunghoon Kang; Catherine L Drennan; JoAnne Stubbe; Daniel G Nocera
Journal:  J Am Chem Soc       Date:  2020-12-23       Impact factor: 15.419

2.  Ferritin-Like Proteins: A Conserved Core for a Myriad of Enzyme Complexes.

Authors:  Rahul Banerjee; Vivek Srinivas; Hugo Lebrette
Journal:  Subcell Biochem       Date:  2022

3.  Glutamate Mediates Proton-Coupled Electron Transfer Between Tyrosines 730 and 731 in Escherichia coli Ribonucleotide Reductase.

Authors:  Clorice R Reinhardt; Elvira R Sayfutyarova; Jiayun Zhong; Sharon Hammes-Schiffer
Journal:  J Am Chem Soc       Date:  2021-04-15       Impact factor: 15.419

4.  Stepwise assembly of heterobimetallic complexes: synthesis, structure, and physical properties.

Authors:  Justin L Lee; Victoria F Oswald; Saborni Biswas; Ethan A Hill; Joseph W Ziller; Michael P Hendrich; A S Borovik
Journal:  Dalton Trans       Date:  2021-06-15       Impact factor: 4.390

5.  Artificial Metalloproteins with Dinuclear Iron-Hydroxido Centers.

Authors:  Kelsey R Miller; Saborni Biswas; Andrew Jasniewski; Alec H Follmer; Ankita Biswas; Therese Albert; Sinan Sabuncu; Emile L Bominaar; Michael P Hendrich; Pierre Moënne-Loccoz; A S Borovik
Journal:  J Am Chem Soc       Date:  2021-02-02       Impact factor: 15.419

6.  Detection of Water Molecules on the Radical Transfer Pathway of Ribonucleotide Reductase by 17O Electron-Nuclear Double Resonance Spectroscopy.

Authors:  Fabian Hecker; JoAnne Stubbe; Marina Bennati
Journal:  J Am Chem Soc       Date:  2021-05-06       Impact factor: 15.419

7.  Radicals in Biology: Your Life Is in Their Hands.

Authors:  JoAnne Stubbe; Daniel G Nocera
Journal:  J Am Chem Soc       Date:  2021-08-23       Impact factor: 15.419

Review 8.  Diversity of structures and functions of oxo-bridged non-heme diiron proteins.

Authors:  Maria Luiza Caldas Nogueira; Anthony J Pastore; Victor L Davidson
Journal:  Arch Biochem Biophys       Date:  2021-05-12       Impact factor: 4.114

Review 9.  Metabolomics in cancer research and emerging applications in clinical oncology.

Authors:  Daniel R Schmidt; Rutulkumar Patel; David G Kirsch; Caroline A Lewis; Matthew G Vander Heiden; Jason W Locasale
Journal:  CA Cancer J Clin       Date:  2021-05-13       Impact factor: 286.130

Review 10.  Reposition of the Fungicide Ciclopirox for Cancer Treatment.

Authors:  Zhu Huang; Shile Huang
Journal:  Recent Pat Anticancer Drug Discov       Date:  2021       Impact factor: 3.038

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