Literature DB >> 30347141

Photochemical Rescue of a Conformationally Inactivated Ribonucleotide Reductase.

Brandon L Greene1, JoAnne Stubbe, Daniel G Nocera1.   

Abstract

Class Ia ribonucleotide reductase (RNR) of Escherichia coli contains an unusually stable tyrosyl radical cofactor in the β2 subunit (Y122•) necessary for nucleotide reductase activity. Upon binding the cognate α2 subunit, loaded with nucleoside diphosphate substrate and an allosteric/activity effector, a rate determining conformational change(s) enables rapid radical transfer (RT) within the active α2β2 complex from the Y122• site in β2 to the substrate activating cysteine residue (C439) in α2 via a pathway of redox active amino acids (Y122[β] ↔ W48[β]? ↔ Y356[β] ↔ Y731[α] ↔ Y730[α] ↔ C439[α]) spanning >35 Å. Ionizable residues at the α2β2 interface are essential in mediating RT, and therefore control activity. One of these mutations, E350X (where X = A, D, Q) in β2, obviates all RT, though the mechanism of control by which E350 mediates RT remains unclear. Herein, we utilize an E350Q-photoβ2 construct to photochemically rescue RNR activity from an otherwise inactive construct, wherein the initial RT event (Y122• → Y356) is replaced by direct photochemical radical generation of Y356•. These data present compelling evidence that E350 conveys allosteric information between the α2 and β2 subunits facilitating conformational gating of RT that specifically targets Y122• reduction, while the fidelity of the remainder of the RT pathway is retained.

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Year:  2018        PMID: 30347141      PMCID: PMC6249109          DOI: 10.1021/jacs.8b07902

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  48 in total

1.  Three-dimensional structure of the free radical protein of ribonucleotide reductase.

Authors:  P Nordlund; B M Sjöberg; H Eklund
Journal:  Nature       Date:  1990-06-14       Impact factor: 49.962

2.  Generation of a stable, aminotyrosyl radical-induced α2β2 complex of Escherichia coli class Ia ribonucleotide reductase.

Authors:  Ellen C Minnihan; Nozomi Ando; Edward J Brignole; Lisa Olshansky; Johnathan Chittuluru; Francisco J Asturias; Catherine L Drennan; Daniel G Nocera; Joanne Stubbe
Journal:  Proc Natl Acad Sci U S A       Date:  2013-02-19       Impact factor: 11.205

3.  Glutamate 350 Plays an Essential Role in Conformational Gating of Long-Range Radical Transport in Escherichia coli Class Ia Ribonucleotide Reductase.

Authors:  Kanchana Ravichandran; Ellen C Minnihan; Qinghui Lin; Kenichi Yokoyama; Alexander T Taguchi; Jimin Shao; Daniel G Nocera; JoAnne Stubbe
Journal:  Biochemistry       Date:  2017-02-02       Impact factor: 3.162

4.  Disruption of an oligomeric interface prevents allosteric inhibition of Escherichia coli class Ia ribonucleotide reductase.

Authors:  Percival Yang-Ting Chen; Michael A Funk; Edward J Brignole; Catherine L Drennan
Journal:  J Biol Chem       Date:  2018-04-26       Impact factor: 5.157

5.  Glutamate 52-β at the α/β subunit interface of Escherichia coli class Ia ribonucleotide reductase is essential for conformational gating of radical transfer.

Authors:  Qinghui Lin; Mackenzie J Parker; Alexander T Taguchi; Kanchana Ravichandran; Albert Kim; Gyunghoon Kang; Jimin Shao; Catherine L Drennan; JoAnne Stubbe
Journal:  J Biol Chem       Date:  2017-04-04       Impact factor: 5.157

6.  Spectroscopic Evidence for a H Bond Network at Y356 Located at the Subunit Interface of Active E. coli Ribonucleotide Reductase.

Authors:  Thomas U Nick; Kanchana R Ravichandran; JoAnne Stubbe; Müge Kasanmascheff; Marina Bennati
Journal:  Biochemistry       Date:  2017-07-07       Impact factor: 3.162

7.  RNRdb, a curated database of the universal enzyme family ribonucleotide reductase, reveals a high level of misannotation in sequences deposited to Genbank.

Authors:  Daniel Lundin; Eduard Torrents; Anthony M Poole; Britt-Marie Sjöberg
Journal:  BMC Genomics       Date:  2009-12-08       Impact factor: 3.969

8.  Structure of ribonucleotide reductase protein R1.

Authors:  U Uhlin; H Eklund
Journal:  Nature       Date:  1994-08-18       Impact factor: 49.962

9.  Formal reduction potential of 3,5-difluorotyrosine in a structured protein: insight into multistep radical transfer.

Authors:  Kanchana R Ravichandran; Li Liang; JoAnne Stubbe; Cecilia Tommos
Journal:  Biochemistry       Date:  2013-11-22       Impact factor: 3.162

10.  Hydrogen bond network between amino acid radical intermediates on the proton-coupled electron transfer pathway of E. coli α2 ribonucleotide reductase.

Authors:  Thomas U Nick; Wankyu Lee; Simone Kossmann; Frank Neese; JoAnne Stubbe; Marina Bennati
Journal:  J Am Chem Soc       Date:  2014-12-29       Impact factor: 15.419

View more
  5 in total

1.  Gated Proton Release during Radical Transfer at the Subunit Interface of Ribonucleotide Reductase.

Authors:  Chang Cui; Brandon L Greene; Gyunghoon Kang; Catherine L Drennan; JoAnne Stubbe; Daniel G Nocera
Journal:  J Am Chem Soc       Date:  2020-12-23       Impact factor: 15.419

2.  Selenocysteine Substitution in a Class I Ribonucleotide Reductase.

Authors:  Brandon L Greene; JoAnne Stubbe; Daniel G Nocera
Journal:  Biochemistry       Date:  2019-12-06       Impact factor: 3.162

3.  Kinetic model for reversible radical transfer in ribonucleotide reductase.

Authors:  Clorice R Reinhardt; Daniel Konstantinovsky; Alexander V Soudackov; Sharon Hammes-Schiffer
Journal:  Proc Natl Acad Sci U S A       Date:  2022-06-17       Impact factor: 12.779

4.  19F Electron-Nuclear Double Resonance Reveals Interaction between Redox-Active Tyrosines across the α/β Interface of E. coli Ribonucleotide Reductase.

Authors:  Andreas Meyer; Annemarie Kehl; Chang Cui; Fehmke A K Reichardt; Fabian Hecker; Lisa-Marie Funk; Manas K Ghosh; Kuan-Ting Pan; Henning Urlaub; Kai Tittmann; JoAnne Stubbe; Marina Bennati
Journal:  J Am Chem Soc       Date:  2022-06-02       Impact factor: 16.383

5.  Structure of a trapped radical transfer pathway within a ribonucleotide reductase holocomplex.

Authors:  Gyunghoon Kang; Alexander T Taguchi; JoAnne Stubbe; Catherine L Drennan
Journal:  Science       Date:  2020-03-26       Impact factor: 47.728

  5 in total

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