| Literature DB >> 28118851 |
Wioletta Wujcicka1,2, Edyta Paradowska3, Mirosława Studzińska3, Jan Wilczyński4, Dorota Nowakowska5.
Abstract
BACKGROUND: Human cytomegalovirus (HCMV) is responsible for the most common intrauterine infections, which may be acquired congenitally from infected pregnant woman to fetus. The research was aimed to estimate the role of three single nucleotide polymorphisms (SNPs) located in TLR2 gene, and the common contribution of TLR2, and previously studied TLR4 and TLR9 SNPs, to the occurrence of congenital HCMV infection in fetuses and newborns.Entities:
Keywords: Congenital cytomegaly; Human cytomegalovirus (HCMV); Pregnancy; Single nucleotide polymorphism (SNP); Toll-like receptor 2 (TLR2)
Mesh:
Substances:
Year: 2017 PMID: 28118851 PMCID: PMC5260049 DOI: 10.1186/s12985-016-0679-z
Source DB: PubMed Journal: Virol J ISSN: 1743-422X Impact factor: 4.099
Primers, annealing temperatures and amplicons used in PCR assays for SNPs in the TLR2 gene
| Gene | GenBank accession no.a | SNPb name | Primer sequences (5′-3′) | Annealing temperature [°C] | Amplicon length (bps)c | |
|---|---|---|---|---|---|---|
|
| NC_000004.12 | 1350 T>C | External | For: AATTCAGCCTGTGAGGATGC | 52 | 361 |
| (rs3804100) | Rev: GTAAGAGGGAGGCATCTGGTA | |||||
| (Ser450) | Internal | For: TCATTTGGCATCATTGGAAA | 55 | 248 | ||
| (S450) | Rev: GAGTTGCGGCAAATTCAAAG | |||||
| 2029 C>T; 2258 G>A | External | For: CGGAATGTCACAGGACAGC | 52 | 605 | ||
| (rs121917864; rs5743708) | Rev: GGACTTTATCGCAGCTCTCAG | |||||
| (Arg677Trp; Arg753Gln) | Internal | For: GCCTACTGGGTGGAGAACCT | 59 | 340 | ||
| (R677W; R753Q) | Rev: GGCCACTCCAGGTAGGTCTT | |||||
a No. number
b SNP single nucleotide polymorphism
c bps base pairs
Lengths of restriction fragments and genotypic profiles
|
| Restriction enzyme | Profile (bps)b |
|---|---|---|
| 1350T>C | MwoI | TT: 248 |
| TC: 248, 164, 84 | ||
| CC: 164, 84 | ||
| 2029 C>T | AciI | CC: 227, 75, 38 |
| CT: 302, 227, 75, 38 | ||
| TT: 302, 38 | ||
| 2258 G>A | AciI | GG: 227, 75, 38 |
| GA: 227, 265, 75, 38 | ||
| AA: 265, 75 |
a SNP single nucleotide polymorphism
b bps base pairs
Fig. 1PCR-RFLP profiles for TLR2 1350 T>C (a), and 2029 C>T and 2258 G>A (b) SNPs. RFLP products were separated in 2% agarose gels, stained with ethidium bromide. The numbers on the right side of electropherograms show the lengths of resolved DNA fragments. M – 50 bp DNA marker; Ud – undigested PCR product; CC, GG, GA, TC, and TT – genotypes in analyzed TLR2 SNPs
Fig. 2Chromatograms comprising TLR2 1350 T>C (a, b), 2029 C>T (c), and 2258 G>A (d, e). The genotypes in TLR2 SNPs were determined for the forward strand sequences. CC, GG, GA, TC, and TT – genotypes in described SNPs
Single-SNP analysis of the relationship between TLR2 2258 G>A polymorphism and congenital HCMV infection
| A. | ||||
| Genotype | Genotype frequencies; | ORb (95% CI)c |
| |
| Infected cases | Controls | |||
| GG | 15 (75.0%) | 30 (96.8%) | 1.00 | 0.018 |
| GA | 5 (25.0%) | 1 (3.2%) | 10.00 (1.07–93.44) | |
| B. | ||||
| Genotype | Genotype frequencies; | ORb (95% CI)c |
| |
| Symptomatic cases | Asymptomatic cases | |||
| GG | 9 (81.8%) | 6 (66.7%) | 1.00 | 0.440 |
| GA | 2 (18.2%) | 3 (33.3%) | 0.44 (0.06–3.51) | |
The prevalence rates of genotypes in TLR2 SNP were compared between infected and uninfected fetuses and newborns (A) as well as symptomatic and asymptomatic offsprings with congenital cytomegaly (B)
P ≤ 0.050 is considered as significant
a n number of tested fetuses and newborns
b OR odds ratio
c 95% CI, confidence interval
dlogistic regression model
Multiple-SNP variants for TLR2, TLR4 and TLR9 polymorphisms and the occurrence of congenital HCMV infection
|
| Multiple-SNPa variant | Prevalence rates of multiple-SNP variants | ORb (95% CIc) |
| |
|---|---|---|---|---|---|
| Infected cases | Uninfected controls | ||||
|
| GA | 0.850 | 0.874 | 1.00 | |
| GG | 0.025 | 0.109 | 0.39 (0.06–2.59) | 0.330 | |
| AA | 0.125 | 0.016 | 8.81 (0.93–83.12) | 0.063 | |
|
| GC | 0.875 | 0.859 | 1.00 | |
| AC | 0.125 | 0.016 | 8.03 (0.85–75.63) | 0.075 | |
|
| GA | 0.400 | 0.576 | 1.00 | |
| GG | 0.475 | 0.408 | 1.62 (0.58–4.53) | 0.360 | |
| AA | 0.125 | 0.016 | 11.58 (1.19–112.59) | 0.040 | |
P ≤ 0.050 is considered as significant
a SNPs single nucleotide polymorphisms
b OR odds ratio
c 95% CI confidence interval
dlogistic regression model
Distribution of the alleles, located in TLR2 2258 G>A polymorphic site
| A. | |||
| Gene polymorphism and allele | No.a of carriers with |
| |
| Infected cases | Controls | ||
|
| |||
| G | 35 (87.5) | 61 (98.4) | 0.033b |
| A | 5 (12.5) | 1 (1.6) | |
| B. | |||
| Gene polymorphism and allele | No.a of carriers with |
| |
| Symptomatic cases | Asymptomatic cases | ||
|
| |||
| G | 20 (90.9) | 15 (83.3) | 0.471c |
| A | 2 (9.1) | 3 (16.7) | |
The prevalence rates of alleles in TLR2 SNP were compared between infected and uninfected fetuses and newborns (A) as well as between symptomatic and asymptomatic offsprings with congenital cytomegaly (B)
P ≤ 0.050 is considered significant
a No. number
bFisher’s exact test
cPearson’s Chi-squared test