Literature DB >> 28092361

Designed cell consortia as fragrance-programmable analog-to-digital converters.

Marius Müller1, Simon Ausländer1, Andrea Spinnler1, David Ausländer1, Julian Sikorski1, Marc Folcher1, Martin Fussenegger1,2.   

Abstract

Synthetic biology advances the rational engineering of mammalian cells to achieve cell-based therapy goals. Synthetic gene networks have nearly reached the complexity of digital electronic circuits and enable single cells to perform programmable arithmetic calculations or to provide dynamic remote control of transgenes through electromagnetic waves. We designed a synthetic multilayered gaseous-fragrance-programmable analog-to-digital converter (ADC) allowing for remote control of digital gene expression with 2-bit AND-, OR- and NOR-gate logic in synchronized cell consortia. The ADC consists of multiple sampling-and-quantization modules sensing analog gaseous fragrance inputs; a gas-to-liquid transducer converting fragrance intensity into diffusible cell-to-cell signaling compounds; a digitization unit with a genetic amplifier circuit to improve the signal-to-noise ratio; and recombinase-based digital expression switches enabling 2-bit processing of logic gates. Synthetic ADCs that can remotely control cellular activities with digital precision may enable the development of novel biosensors and may provide bioelectronic interfaces synchronizing analog metabolic pathways with digital electronics.

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Year:  2017        PMID: 28092361     DOI: 10.1038/nchembio.2281

Source DB:  PubMed          Journal:  Nat Chem Biol        ISSN: 1552-4450            Impact factor:   15.040


  51 in total

1.  Distributed biological computation with multicellular engineered networks.

Authors:  Sergi Regot; Javier Macia; Núria Conde; Kentaro Furukawa; Jimmy Kjellén; Tom Peeters; Stefan Hohmann; Eulàlia de Nadal; Francesc Posas; Ricard Solé
Journal:  Nature       Date:  2010-12-08       Impact factor: 49.962

2.  Genetic control of mammalian T-cell proliferation with synthetic RNA regulatory systems.

Authors:  Yvonne Y Chen; Michael C Jensen; Christina D Smolke
Journal:  Proc Natl Acad Sci U S A       Date:  2010-04-26       Impact factor: 11.205

3.  Radio-wave heating of iron oxide nanoparticles can regulate plasma glucose in mice.

Authors:  Sarah A Stanley; Jennifer E Gagner; Shadi Damanpour; Mitsukuni Yoshida; Jonathan S Dordick; Jeffrey M Friedman
Journal:  Science       Date:  2012-05-04       Impact factor: 47.728

4.  Bile acid-controlled transgene expression in mammalian cells and mice.

Authors:  Katrin Rössger; Ghislaine Charpin-El-Hamri; Martin Fussenegger
Journal:  Metab Eng       Date:  2013-11-24       Impact factor: 9.783

5.  Conditional human VEGF-mediated vascularization in chicken embryos using a novel temperature-inducible gene regulation (TIGR) system.

Authors:  Wilfried Weber; René R Marty; Nils Link; Martin Ehrbar; Bettina Keller; Cornelia C Weber; Andreas H Zisch; Christoph Heinzen; Valentin Djonov; Martin Fussenegger
Journal:  Nucleic Acids Res       Date:  2003-06-15       Impact factor: 16.971

6.  Targeting cells with single vectors using multiple-feature Boolean logic.

Authors:  Lief E Fenno; Joanna Mattis; Charu Ramakrishnan; Minsuk Hyun; Soo Yeun Lee; Miao He; Jason Tucciarone; Aslihan Selimbeyoglu; Andre Berndt; Logan Grosenick; Kelly A Zalocusky; Hannah Bernstein; Haley Swanson; Chelsey Perry; Ilka Diester; Frederick M Boyce; Caroline E Bass; Rachael Neve; Z Josh Huang; Karl Deisseroth
Journal:  Nat Methods       Date:  2014-06-08       Impact factor: 28.547

7.  Permanent genetic memory with >1-byte capacity.

Authors:  Lei Yang; Alec A K Nielsen; Jesus Fernandez-Rodriguez; Conor J McClune; Michael T Laub; Timothy K Lu; Christopher A Voigt
Journal:  Nat Methods       Date:  2014-10-26       Impact factor: 28.547

8.  Engineering Customized Cell Sensing and Response Behaviors Using Synthetic Notch Receptors.

Authors:  Leonardo Morsut; Kole T Roybal; Xin Xiong; Russell M Gordley; Scott M Coyle; Matthew Thomson; Wendell A Lim
Journal:  Cell       Date:  2016-01-28       Impact factor: 41.582

9.  Vitamin H-regulated transgene expression in mammalian cells.

Authors:  Wilfried Weber; William Bacchus; Marie Daoud-El Baba; Martin Fussenegger
Journal:  Nucleic Acids Res       Date:  2007-09-07       Impact factor: 16.971

10.  Synthetic mixed-signal computation in living cells.

Authors:  Jacob R Rubens; Gianluca Selvaggio; Timothy K Lu
Journal:  Nat Commun       Date:  2016-06-03       Impact factor: 14.919

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  15 in total

Review 1.  Mammalian synthetic biology in the age of genome editing and personalized medicine.

Authors:  Patrick Ho; Yvonne Y Chen
Journal:  Curr Opin Chem Biol       Date:  2017-06-16       Impact factor: 8.822

2.  Optogenerapy: When bio-electronic implant enters the modern syringe era.

Authors:  Fanny Michel; Marc Folcher
Journal:  Porto Biomed J       Date:  2017-07-29

3.  Programmable full-adder computations in communicating three-dimensional cell cultures.

Authors:  David Ausländer; Simon Ausländer; Xavier Pierrat; Leon Hellmann; Leila Rachid; Martin Fussenegger
Journal:  Nat Methods       Date:  2017-12-04       Impact factor: 28.547

4.  In vivo biosensors: mechanisms, development, and applications.

Authors:  Shuobo Shi; Ee Lui Ang; Huimin Zhao
Journal:  J Ind Microbiol Biotechnol       Date:  2018-01-29       Impact factor: 3.346

5.  Scaling Computation and Memory in Living Cells.

Authors:  Kevin Yehl; Timothy Lu
Journal:  Curr Opin Biomed Eng       Date:  2017-12

6.  Synthetic memory circuits for stable cell reprogramming in plants.

Authors:  James P B Lloyd; Florence Ly; Patrick Gong; Jahnvi Pflueger; Tessa Swain; Christian Pflueger; Elliott Fourie; Muhammad Adil Khan; Brendan N Kidd; Ryan Lister
Journal:  Nat Biotechnol       Date:  2022-07-04       Impact factor: 68.164

7.  Designer cells programming quorum-sensing interference with microbes.

Authors:  Ferdinand Sedlmayer; Dennis Hell; Marius Müller; David Ausländer; Martin Fussenegger
Journal:  Nat Commun       Date:  2018-05-08       Impact factor: 14.919

8.  Sensing and responding to allergic response cytokines through a genetically encoded circuit.

Authors:  Hélène Chassin; Barbara Geering; Lina Schukur; David Ausländer; Brian Lang; Martin Fussenegger
Journal:  Nat Commun       Date:  2017-10-24       Impact factor: 14.919

9.  Scaling up genetic circuit design for cellular computing: advances and prospects.

Authors:  Yiyu Xiang; Neil Dalchau; Baojun Wang
Journal:  Nat Comput       Date:  2018-10-05       Impact factor: 1.690

10.  Quantitative characterization of recombinase-based digitizer circuits enables predictable amplification of biological signals.

Authors:  Katherine A Kiwimagi; Justin H Letendre; Benjamin H Weinberg; Junmin Wang; Mingzhe Chen; Leandro Watanabe; Chris J Myers; Jacob Beal; Wilson W Wong; Ron Weiss
Journal:  Commun Biol       Date:  2021-07-15
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