Literature DB >> 28628856

Mammalian synthetic biology in the age of genome editing and personalized medicine.

Patrick Ho1, Yvonne Y Chen2.   

Abstract

The recent expansion of molecular tool kits has propelled synthetic biology toward the design of increasingly sophisticated mammalian systems. Specifically, advances in genome editing, protein engineering, and circuitry design have enabled the programming of cells for diverse applications, including regenerative medicine and cancer immunotherapy. The ease with which molecular and cellular interactions can be harnessed promises to yield novel approaches to elucidate genetic interactions, program cellular functions, and design therapeutic interventions. Here, we review recent advancements in the development of enabling technologies and the practical applications of mammalian synthetic biology.
Copyright © 2017 Elsevier Ltd. All rights reserved.

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Year:  2017        PMID: 28628856      PMCID: PMC5696019          DOI: 10.1016/j.cbpa.2017.06.003

Source DB:  PubMed          Journal:  Curr Opin Chem Biol        ISSN: 1367-5931            Impact factor:   8.822


  63 in total

1.  Efficient Detection and Purification of Cell Populations Using Synthetic MicroRNA Switches.

Authors:  Kenji Miki; Kei Endo; Seiya Takahashi; Shunsuke Funakoshi; Ikue Takei; Shota Katayama; Taro Toyoda; Maki Kotaka; Tadashi Takaki; Masayuki Umeda; Chikako Okubo; Misato Nishikawa; Akiko Oishi; Megumi Narita; Ito Miyashita; Kanako Asano; Karin Hayashi; Kenji Osafune; Shinya Yamanaka; Hirohide Saito; Yoshinori Yoshida
Journal:  Cell Stem Cell       Date:  2015-05-21       Impact factor: 24.633

2.  Dissecting Immune Circuits by Linking CRISPR-Pooled Screens with Single-Cell RNA-Seq.

Authors:  Diego Adhemar Jaitin; Assaf Weiner; Ido Yofe; David Lara-Astiaso; Hadas Keren-Shaul; Eyal David; Tomer Meir Salame; Amos Tanay; Alexander van Oudenaarden; Ido Amit
Journal:  Cell       Date:  2016-12-15       Impact factor: 41.582

3.  Designable DNA-binding domains enable construction of logic circuits in mammalian cells.

Authors:  Rok Gaber; Tina Lebar; Andreja Majerle; Branko Šter; Andrej Dobnikar; Mojca Benčina; Roman Jerala
Journal:  Nat Chem Biol       Date:  2014-01-12       Impact factor: 15.040

4.  Small molecules enhance CRISPR genome editing in pluripotent stem cells.

Authors:  Chen Yu; Yanxia Liu; Tianhua Ma; Kai Liu; Shaohua Xu; Yu Zhang; Honglei Liu; Marie La Russa; Min Xie; Sheng Ding; Lei S Qi
Journal:  Cell Stem Cell       Date:  2015-02-05       Impact factor: 24.633

5.  RNAi Reveals Phase-Specific Global Regulators of Human Somatic Cell Reprogramming.

Authors:  Cheng-Xu Delon Toh; Jun-Wei Chan; Zheng-Shan Chong; Hao Fei Wang; Hong Chao Guo; Sandeep Satapathy; Dongrui Ma; Germaine Yen Lin Goh; Ekta Khattar; Lin Yang; Vinay Tergaonkar; Young-Tae Chang; James J Collins; George Q Daley; Keng Boon Wee; Chadi A El Farran; Hu Li; Yoon-Pin Lim; Frederic A Bard; Yuin-Han Loh
Journal:  Cell Rep       Date:  2016-06-09       Impact factor: 9.423

6.  Quantitative Analyses of Core Promoters Enable Precise Engineering of Regulated Gene Expression in Mammalian Cells.

Authors:  Christopher Ede; Ximin Chen; Meng-Yin Lin; Yvonne Y Chen
Journal:  ACS Synth Biol       Date:  2016-03-01       Impact factor: 5.110

7.  Multiplexed and programmable regulation of gene networks with an integrated RNA and CRISPR/Cas toolkit in human cells.

Authors:  Lior Nissim; Samuel D Perli; Alexandra Fridkin; Pablo Perez-Pinera; Timothy K Lu
Journal:  Mol Cell       Date:  2014-05-15       Impact factor: 17.970

8.  A Multiplexed Single-Cell CRISPR Screening Platform Enables Systematic Dissection of the Unfolded Protein Response.

Authors:  Britt Adamson; Thomas M Norman; Marco Jost; Min Y Cho; James K Nuñez; Yuwen Chen; Jacqueline E Villalta; Luke A Gilbert; Max A Horlbeck; Marco Y Hein; Ryan A Pak; Andrew N Gray; Carol A Gross; Atray Dixit; Oren Parnas; Aviv Regev; Jonathan S Weissman
Journal:  Cell       Date:  2016-12-15       Impact factor: 41.582

9.  CRISPR-based self-cleaving mechanism for controllable gene delivery in human cells.

Authors:  Richard Moore; Alec Spinhirne; Michael J Lai; Samantha Preisser; Yi Li; Taek Kang; Leonidas Bleris
Journal:  Nucleic Acids Res       Date:  2014-12-18       Impact factor: 16.971

10.  Engineering Customized Cell Sensing and Response Behaviors Using Synthetic Notch Receptors.

Authors:  Leonardo Morsut; Kole T Roybal; Xin Xiong; Russell M Gordley; Scott M Coyle; Matthew Thomson; Wendell A Lim
Journal:  Cell       Date:  2016-01-28       Impact factor: 41.582

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  7 in total

1.  Synthetic biology advances and applications in the biotechnology industry: a perspective.

Authors:  Leonard Katz; Yvonne Y Chen; Ramon Gonzalez; Todd C Peterson; Huimin Zhao; Richard H Baltz
Journal:  J Ind Microbiol Biotechnol       Date:  2018-06-18       Impact factor: 3.346

2.  A compact synthetic pathway rewires cancer signaling to therapeutic effector release.

Authors:  Hokyung K Chung; Xinzhi Zou; Bryce T Bajar; Veronica R Brand; Yunwen Huo; Javier F Alcudia; James E Ferrell; Michael Z Lin
Journal:  Science       Date:  2019-05-03       Impact factor: 47.728

3.  Bottom-up approaches in synthetic biology and biomaterials for tissue engineering applications.

Authors:  Mitchell S Weisenberger; Tara L Deans
Journal:  J Ind Microbiol Biotechnol       Date:  2018-03-19       Impact factor: 3.346

Review 4.  Context-aware synthetic biology by controller design: Engineering the mammalian cell.

Authors:  Nika Shakiba; Ross D Jones; Ron Weiss; Domitilla Del Vecchio
Journal:  Cell Syst       Date:  2021-06-16       Impact factor: 11.091

5.  A Synthetic Light-switchable System based on CRISPR Cas13a Regulates the Expression of LncRNA MALAT1 and Affects the Malignant Phenotype of Bladder Cancer Cells.

Authors:  Fuming Qi; Bo Tan; Fujun Ma; Bo Zhu; Li Zhang; Xiaoyun Liu; Honglei Li; Jinhui Yang; Bo Cheng
Journal:  Int J Biol Sci       Date:  2019-06-04       Impact factor: 6.580

6.  Multi-Layer Controls of Cas9 Activity Coupled With ATP Synthase Over-Expression for Efficient Genome Editing in Streptomyces.

Authors:  Kai Wang; Qing-Wei Zhao; Yi-Fan Liu; Chen-Fan Sun; Xin-Ai Chen; Richard Burchmore; Karl Burgess; Yong-Quan Li; Xu-Ming Mao
Journal:  Front Bioeng Biotechnol       Date:  2019-11-01

Review 7.  Theranostic cells: emerging clinical applications of synthetic biology.

Authors:  Monica P McNerney; Kailyn E Doiron; Tai L Ng; Timothy Z Chang; Pamela A Silver
Journal:  Nat Rev Genet       Date:  2021-07-07       Impact factor: 53.242

  7 in total

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