Literature DB >> 29200199

Programmable full-adder computations in communicating three-dimensional cell cultures.

David Ausländer1, Simon Ausländer1, Xavier Pierrat1, Leon Hellmann1, Leila Rachid1, Martin Fussenegger1,2.   

Abstract

Synthetic biologists have advanced the design of trigger-inducible gene switches and their assembly into input-programmable circuits that enable engineered human cells to perform arithmetic calculations reminiscent of electronic circuits. By designing a versatile plug-and-play molecular-computation platform, we have engineered nine different cell populations with genetic programs, each of which encodes a defined computational instruction. When assembled into 3D cultures, these engineered cell consortia execute programmable multicellular full-adder logics in response to three trigger compounds.

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Year:  2017        PMID: 29200199     DOI: 10.1038/nmeth.4505

Source DB:  PubMed          Journal:  Nat Methods        ISSN: 1548-7091            Impact factor:   28.547


  21 in total

1.  Tight control of gene expression in mammalian cells by tetracycline-responsive promoters.

Authors:  M Gossen; H Bujard
Journal:  Proc Natl Acad Sci U S A       Date:  1992-06-15       Impact factor: 11.205

2.  Distributed biological computation with multicellular engineered networks.

Authors:  Sergi Regot; Javier Macia; Núria Conde; Kentaro Furukawa; Jimmy Kjellén; Tom Peeters; Stefan Hohmann; Eulàlia de Nadal; Francesc Posas; Ricard Solé
Journal:  Nature       Date:  2010-12-08       Impact factor: 49.962

3.  Optimization of the Tet-On system for regulated gene expression through viral evolution.

Authors:  X Zhou; M Vink; B Klaver; B Berkhout; A T Das
Journal:  Gene Ther       Date:  2006-05-25       Impact factor: 5.250

4.  SAMY, a novel mammalian reporter gene derived from Bacillus stearothermophilus alpha-amylase.

Authors:  Stefan Schlatter; Markus Rimann; Jens Kelm; Martin Fussenegger
Journal:  Gene       Date:  2002-01-09       Impact factor: 3.688

5.  Collective Space-Sensing Coordinates Pattern Scaling in Engineered Bacteria.

Authors:  Yangxiaolu Cao; Marc D Ryser; Stephen Payne; Bochong Li; Christopher V Rao; Lingchong You
Journal:  Cell       Date:  2016-04-21       Impact factor: 41.582

6.  A general design strategy for protein-responsive riboswitches in mammalian cells.

Authors:  Simon Ausländer; Pascal Stücheli; Charlotte Rehm; David Ausländer; Jörg S Hartig; Martin Fussenegger
Journal:  Nat Methods       Date:  2014-10-05       Impact factor: 28.547

7.  Designed cell consortia as fragrance-programmable analog-to-digital converters.

Authors:  Marius Müller; Simon Ausländer; Andrea Spinnler; David Ausländer; Julian Sikorski; Marc Folcher; Martin Fussenegger
Journal:  Nat Chem Biol       Date:  2017-01-16       Impact factor: 15.040

8.  Transplantation of prokaryotic two-component signaling pathways into mammalian cells.

Authors:  Jonathan Hansen; Erik Mailand; Krishna Kumar Swaminathan; Joerg Schreiber; Bartolomeo Angelici; Yaakov Benenson
Journal:  Proc Natl Acad Sci U S A       Date:  2014-10-20       Impact factor: 11.205

9.  Multiplexed and programmable regulation of gene networks with an integrated RNA and CRISPR/Cas toolkit in human cells.

Authors:  Lior Nissim; Samuel D Perli; Alexandra Fridkin; Pablo Perez-Pinera; Timothy K Lu
Journal:  Mol Cell       Date:  2014-05-15       Impact factor: 17.970

10.  A designer cell-based histamine-specific human allergy profiler.

Authors:  David Ausländer; Benjamin Eggerschwiler; Christian Kemmer; Barbara Geering; Simon Ausländer; Martin Fussenegger
Journal:  Nat Commun       Date:  2014-08-05       Impact factor: 14.919

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  9 in total

1.  A versatile genetic control system in mammalian cells and mice responsive to clinically licensed sodium ferulate.

Authors:  Yidan Wang; Shuyong Liao; Ningzi Guan; Yuanxiao Liu; Kaili Dong; Wilfried Weber; Haifeng Ye
Journal:  Sci Adv       Date:  2020-08-07       Impact factor: 14.136

2.  Construction of Caffeine-Inducible Gene Switches in Mammalian Cells.

Authors:  Daniel Bojar
Journal:  Methods Mol Biol       Date:  2021

3.  Scaling up genetic circuit design for cellular computing: advances and prospects.

Authors:  Yiyu Xiang; Neil Dalchau; Baojun Wang
Journal:  Nat Comput       Date:  2018-10-05       Impact factor: 1.690

4.  Computational Models Accurately Predict Multi-Cell Biomarker Profiles in Inflammation and Cancer.

Authors:  Carol L Fischer; Amber M Bates; Emily A Lanzel; Janet M Guthmiller; Georgia K Johnson; Neeraj Kumar Singh; Ansu Kumar; Robinson Vidva; Taher Abbasi; Shireen Vali; Xian Jin Xie; Erliang Zeng; Kim A Brogden
Journal:  Sci Rep       Date:  2019-07-26       Impact factor: 4.379

5.  Design of modular autoproteolytic gene switches responsive to anti-coronavirus drug candidates.

Authors:  Nik Franko; Ana Palma Teixeira; Shuai Xue; Ghislaine Charpin-El Hamri; Martin Fussenegger
Journal:  Nat Commun       Date:  2021-11-22       Impact factor: 14.919

6.  A single layer artificial neural network type architecture with molecular engineered bacteria for reversible and irreversible computing.

Authors:  Kathakali Sarkar; Deepro Bonnerjee; Rajkamal Srivastava; Sangram Bagh
Journal:  Chem Sci       Date:  2021-11-09       Impact factor: 9.825

7.  Cellular Computational Logic Using Toehold Switches.

Authors:  Seungdo Choi; Geonhu Lee; Jongmin Kim
Journal:  Int J Mol Sci       Date:  2022-04-12       Impact factor: 6.208

8.  Genetic circuit design automation for yeast.

Authors:  Ye Chen; Shuyi Zhang; Eric M Young; Timothy S Jones; Douglas Densmore; Christopher A Voigt
Journal:  Nat Microbiol       Date:  2020-08-03       Impact factor: 17.745

9.  Control of gene expression in engineered mammalian cells with a programmable shear-stress inducer.

Authors:  Tobias Strittmatter; Paul Argast; Peter Buchman; Krzysztof Krawczyk; Martin Fussenegger
Journal:  Biotechnol Bioeng       Date:  2021-09-20       Impact factor: 4.395

  9 in total

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