Literature DB >> 28075562

Evidence for a Di-μ-oxo Diamond Core in the Mn(IV)/Fe(IV) Activation Intermediate of Ribonucleotide Reductase from Chlamydia trachomatis.

Ryan J Martinie1, Elizabeth J Blaesi1, Carsten Krebs1, J Martin Bollinger1, Alexey Silakov1, Christopher J Pollock1.   

Abstract

High-valent iron and manganese complexes effect some of the most challenging biochemical reactions known, including hydrocarbon and water oxidations associated with the global carbon cycle and oxygenic photosynthesis, respectively. Their extreme reactivity presents an impediment to structural characterization, but their biological importance and potential chemical utility have, nevertheless, motivated extensive efforts toward that end. Several such intermediates accumulate during activation of class I ribonucleotide reductase (RNR) β subunits, which self-assemble dimetal cofactors with stable one-electron oxidants that serve to initiate the enzyme's free-radical mechanism. In the class I-c β subunit from Chlamydia trachomatis, a heterodinuclear Mn(II)/Fe(II) complex reacts with dioxygen to form a Mn(IV)/Fe(IV) intermediate, which undergoes reduction of the iron site to produce the active Mn(IV)/Fe(III) cofactor. Herein, we assess the structure of the Mn(IV)/Fe(IV) activation intermediate using Fe- and Mn-edge extended X-ray absorption fine structure (EXAFS) analysis and multifrequency pulse electron paramagnetic resonance (EPR) spectroscopy. The EXAFS results reveal a metal-metal vector of 2.74-2.75 Å and an intense light-atom (C/N/O) scattering interaction 1.8 Å from the Fe. Pulse EPR data reveal an exchangeable deuterium hyperfine coupling of strength |T| = 0.7 MHz, but no stronger couplings. The results suggest that the intermediate possesses a di-μ-oxo diamond core structure with a terminal hydroxide ligand to the Mn(IV).

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Year:  2017        PMID: 28075562      PMCID: PMC5518598          DOI: 10.1021/jacs.6b11563

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  68 in total

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Authors:  Nicholas Cox; Dimitrios A Pantazis; Frank Neese; Wolfgang Lubitz
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2.  Parameter-free calculations of X-ray spectra with FEFF9.

Authors:  John J Rehr; Joshua J Kas; Fernando D Vila; Micah P Prange; Kevin Jorissen
Journal:  Phys Chem Chem Phys       Date:  2010-05-06       Impact factor: 3.676

3.  Photosynthesis. Electronic structure of the oxygen-evolving complex in photosystem II prior to O-O bond formation.

Authors:  Nicholas Cox; Marius Retegan; Frank Neese; Dimitrios A Pantazis; Alain Boussac; Wolfgang Lubitz
Journal:  Science       Date:  2014-08-14       Impact factor: 47.728

Review 4.  Cyanobacterial alkane biosynthesis further expands the catalytic repertoire of the ferritin-like 'di-iron-carboxylate' proteins.

Authors:  Carsten Krebs; J Martin Bollinger; Squire J Booker
Journal:  Curr Opin Chem Biol       Date:  2011-04       Impact factor: 8.822

5.  Conversion of fatty aldehydes to alka(e)nes and formate by a cyanobacterial aldehyde decarbonylase: cryptic redox by an unusual dimetal oxygenase.

Authors:  Ning Li; Hanne Nørgaard; Douglas M Warui; Squire J Booker; Carsten Krebs; J Martin Bollinger
Journal:  J Am Chem Soc       Date:  2011-04-04       Impact factor: 15.419

6.  A diiron(IV) complex that cleaves strong C-H and O-H bonds.

Authors:  Dong Wang; Erik R Farquhar; Audria Stubna; Eckard Münck; Lawrence Que
Journal:  Nat Chem       Date:  2009-05       Impact factor: 24.427

7.  Iron and free radical in ribonucleotide reductase. Exchange of iron and Mössbauer spectroscopy of the protein B2 subunit of the Escherichia coli enzyme.

Authors:  C L Atkin; L Thelander; P Reichard; G Lang
Journal:  J Biol Chem       Date:  1973-11-10       Impact factor: 5.157

8.  Branched activation- and catalysis-specific pathways for electron relay to the manganese/iron cofactor in ribonucleotide reductase from Chlamydia trachomatis.

Authors:  Wei Jiang; Lana Saleh; Eric W Barr; Jiajia Xie; Monique Maslak Gardner; Carsten Krebs; J Martin Bollinger
Journal:  Biochemistry       Date:  2008-07-26       Impact factor: 3.162

9.  Spectroscopic and electronic structure studies of intermediate X in ribonucleotide reductase R2 and two variants: a description of the FeIV-oxo bond in the FeIII-O-FeIV dimer.

Authors:  Natasa Mitić; Michael D Clay; Lana Saleh; J Martin Bollinger; Edward I Solomon
Journal:  J Am Chem Soc       Date:  2007-06-29       Impact factor: 15.419

10.  Identification of the stable free radical tyrosine residue in ribonucleotide reductase.

Authors:  A Larsson; B M Sjöberg
Journal:  EMBO J       Date:  1986-08       Impact factor: 11.598

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  12 in total

1.  High-Resolution Extended X-ray Absorption Fine Structure Analysis Provides Evidence for a Longer Fe···Fe Distance in the Q Intermediate of Methane Monooxygenase.

Authors:  George E Cutsail; Rahul Banerjee; Ang Zhou; Lawrence Que; John D Lipscomb; Serena DeBeer
Journal:  J Am Chem Soc       Date:  2018-11-16       Impact factor: 15.419

Review 2.  Dioxygen Activation by Nonheme Diiron Enzymes: Diverse Dioxygen Adducts, High-Valent Intermediates, and Related Model Complexes.

Authors:  Andrew J Jasniewski; Lawrence Que
Journal:  Chem Rev       Date:  2018-02-05       Impact factor: 60.622

3.  Two-Color Valence-to-Core X-ray Emission Spectroscopy Tracks Cofactor Protonation State in a Class I Ribonucleotide Reductase.

Authors:  Ryan J Martinie; Elizabeth J Blaesi; J Martin Bollinger; Carsten Krebs; Kenneth D Finkelstein; Christopher J Pollock
Journal:  Angew Chem Int Ed Engl       Date:  2018-09-04       Impact factor: 15.336

4.  Chemical flexibility of heterobimetallic Mn/Fe cofactors: R2lox and R2c proteins.

Authors:  Yury Kutin; Ramona Kositzki; Rui M M Branca; Vivek Srinivas; Daniel Lundin; Michael Haumann; Martin Högbom; Nicholas Cox; Julia J Griese
Journal:  J Biol Chem       Date:  2019-10-07       Impact factor: 5.157

5.  Oxoiron(IV) complexes as synthons for the assembly of heterobimetallic centers such as the Fe/Mn active site of Class Ic ribonucleotide reductases.

Authors:  Ang Zhou; Patrick M Crossland; Apparao Draksharapu; Andrew J Jasniewski; Scott T Kleespies; Lawrence Que
Journal:  J Biol Inorg Chem       Date:  2017-12-07       Impact factor: 3.358

6.  Key Structural Motifs Balance Metal Binding and Oxidative Reactivity in a Heterobimetallic Mn/Fe Protein.

Authors:  Effie C Kisgeropoulos; Julia J Griese; Zachary R Smith; Rui M M Branca; Camille R Schneider; Martin Högbom; Hannah S Shafaat
Journal:  J Am Chem Soc       Date:  2020-03-09       Impact factor: 15.419

7.  Stepwise assembly of heterobimetallic complexes: synthesis, structure, and physical properties.

Authors:  Justin L Lee; Victoria F Oswald; Saborni Biswas; Ethan A Hill; Joseph W Ziller; Michael P Hendrich; A S Borovik
Journal:  Dalton Trans       Date:  2021-06-15       Impact factor: 4.390

8.  Quantification of Ni-N-O Bond Angles and NO Activation by X-ray Emission Spectroscopy.

Authors:  Phan N Phu; Carlos E Gutierrez; Subrata Kundu; Dimosthenis Sokaras; Thomas Kroll; Timothy H Warren; S Chantal E Stieber
Journal:  Inorg Chem       Date:  2020-12-29       Impact factor: 5.436

9.  Spontaneous Formation of an Fe/Mn Diamond Core: Models for the Fe/Mn Sites in Class 1c Ribonucleotide Reductases.

Authors:  Patrick M Crossland; Yisong Guo; Lawrence Que
Journal:  Inorg Chem       Date:  2021-06-10       Impact factor: 5.165

Review 10.  Involvement of high-valent manganese-oxo intermediates in oxidation reactions: realisation in nature, nano and molecular systems.

Authors:  Mani Balamurugan; Natarajan Saravanan; Heonjin Ha; Yoon Ho Lee; Ki Tae Nam
Journal:  Nano Converg       Date:  2018-07-04
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