Literature DB >> 31591267

Chemical flexibility of heterobimetallic Mn/Fe cofactors: R2lox and R2c proteins.

Yury Kutin1, Ramona Kositzki2, Rui M M Branca3, Vivek Srinivas4, Daniel Lundin4, Michael Haumann2, Martin Högbom4, Nicholas Cox5, Julia J Griese6,7.   

Abstract

A heterobimetallic Mn/Fe cofactor is present in the R2 subunit of class Ic ribonucleotide reductases (R2c) and in R2-like ligand-binding oxidases (R2lox). Although the protein-derived metal ligands are the same in both groups of proteins, the connectivity of the two metal ions and the chemistry each cofactor performs are different: in R2c, a one-electron oxidant, the Mn/Fe dimer is linked by two oxygen bridges (μ-oxo/μ-hydroxo), whereas in R2lox, a two-electron oxidant, it is linked by a single oxygen bridge (μ-hydroxo) and a fatty acid ligand. Here, we identified a second coordination sphere residue that directs the divergent reactivity of the protein scaffold. We found that the residue that directly precedes the N-terminal carboxylate metal ligand is conserved as a glycine within the R2lox group but not in R2c. Substitution of the glycine with leucine converted the resting-state R2lox cofactor to an R2c-like cofactor, a μ-oxo/μ-hydroxo-bridged MnIII/FeIII dimer. This species has recently been observed as an intermediate of the oxygen activation reaction in WT R2lox, indicating that it is physiologically relevant. Cofactor maturation in R2c and R2lox therefore follows the same pathway, with structural and functional divergence of the two cofactor forms following oxygen activation. We also show that the leucine-substituted variant no longer functions as a two-electron oxidant. Our results reveal that the residue preceding the N-terminal metal ligand directs the cofactor's reactivity toward one- or two-electron redox chemistry, presumably by setting the protonation state of the bridging oxygens and thereby perturbing the redox potential of the Mn ion.
© 2019 Kutin et al.

Entities:  

Keywords:  R2-like ligand-binding oxidase; X-ray absorption spectroscopy; X-ray crystallography; binuclear metal cofactor; electron paramagnetic resonance (EPR); ferritin; mass spectrometry (MS); metalloprotein; redox chemistry; ribonucleotide reductase

Mesh:

Substances:

Year:  2019        PMID: 31591267      PMCID: PMC6885639          DOI: 10.1074/jbc.RA119.010570

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  62 in total

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4.  Electronic structural flexibility of heterobimetallic Mn/Fe cofactors: R2lox and R2c proteins.

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Journal:  J Am Chem Soc       Date:  2014-09-15       Impact factor: 15.419

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7.  Location-specific quantification of protein-bound metal ions by X-ray anomalous dispersion: Q-XAD.

Authors:  Julia J Griese; Martin Högbom
Journal:  Acta Crystallogr D Struct Biol       Date:  2019-07-31       Impact factor: 7.652

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Authors:  Laura M K Dassama; Amie K Boal; Carsten Krebs; Amy C Rosenzweig; J Martin Bollinger
Journal:  J Am Chem Soc       Date:  2012-01-25       Impact factor: 15.419

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Journal:  FEBS Lett       Date:  2007-06-21       Impact factor: 4.124

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  4 in total

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Authors:  Effie C Kisgeropoulos; Yunqiao J Gan; Samuel M Greer; Joseph M Hazel; Hannah S Shafaat
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2.  Key Structural Motifs Balance Metal Binding and Oxidative Reactivity in a Heterobimetallic Mn/Fe Protein.

Authors:  Effie C Kisgeropoulos; Julia J Griese; Zachary R Smith; Rui M M Branca; Camille R Schneider; Martin Högbom; Hannah S Shafaat
Journal:  J Am Chem Soc       Date:  2020-03-09       Impact factor: 15.419

3.  Comparative structural analysis provides new insights into the function of R2-like ligand-binding oxidase.

Authors:  Riccardo Diamanti; Vivek Srinivas; Annika I Johansson; Anders Nordström; Julia J Griese; Hugo Lebrette; Martin Högbom
Journal:  FEBS Lett       Date:  2022-03-04       Impact factor: 3.864

4.  The Bacillus anthracis class Ib ribonucleotide reductase subunit NrdF intrinsically selects manganese over iron.

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