Literature DB >> 28068315

Hyperspectral phasor analysis enables multiplexed 5D in vivo imaging.

Francesco Cutrale1,2, Vikas Trivedi1,2,3,4, Le A Trinh1,2, Chi-Li Chiu5, John M Choi1,2, Marcela S Artiga1,2, Scott E Fraser1,2.   

Abstract

Time-lapse imaging of multiple labels is challenging for biological imaging as noise, photobleaching and phototoxicity compromise signal quality, while throughput can be limited by processing time. Here, we report software called Hyper-Spectral Phasors (HySP) for denoising and unmixing multiple spectrally overlapping fluorophores in a low signal-to-noise regime with fast analysis. We show that HySP enables unmixing of seven signals in time-lapse imaging of living zebrafish embryos.

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Year:  2017        PMID: 28068315     DOI: 10.1038/nmeth.4134

Source DB:  PubMed          Journal:  Nat Methods        ISSN: 1548-7091            Impact factor:   28.547


  25 in total

Review 1.  Multi-spectral imaging and linear unmixing add a whole new dimension to laser scanning fluorescence microscopy.

Authors:  M E Dickinson; G Bearman; S Tille; R Lansford; S E Fraser
Journal:  Biotechniques       Date:  2001-12       Impact factor: 1.993

2.  Resolution of multiple green fluorescent protein color variants and dyes using two-photon microscopy and imaging spectroscopy.

Authors:  R Lansford; G Bearman; S E Fraser
Journal:  J Biomed Opt       Date:  2001-07       Impact factor: 3.170

3.  Cellular and molecular analyses of vascular tube and lumen formation in zebrafish.

Authors:  Suk-Won Jin; Dimitris Beis; Tracy Mitchell; Jau-Nian Chen; Didier Y R Stainier
Journal:  Development       Date:  2005-10-26       Impact factor: 6.868

Review 4.  Multispectral imaging in biology and medicine: slices of life.

Authors:  Richard M Levenson; James R Mansfield
Journal:  Cytometry A       Date:  2006-08-01       Impact factor: 4.355

5.  The phasor approach to fluorescence lifetime imaging analysis.

Authors:  Michelle A Digman; Valeria R Caiolfa; Moreno Zamai; Enrico Gratton
Journal:  Biophys J       Date:  2007-11-02       Impact factor: 4.033

6.  Fast fluorescence microscopy for imaging the dynamics of embryonic development.

Authors:  Julien Vermot; Scott E Fraser; Michael Liebling
Journal:  HFSP J       Date:  2008-05-13

7.  Spectral Phasor approach for fingerprinting of photo-activatable fluorescent proteins Dronpa, Kaede and KikGR.

Authors:  Francesco Cutrale; Anya Salih; Enrico Gratton
Journal:  Methods Appl Fluoresc       Date:  2013       Impact factor: 3.009

8.  In toto imaging of embryogenesis with confocal time-lapse microscopy.

Authors:  Sean G Megason
Journal:  Methods Mol Biol       Date:  2009

9.  Quantitative assessment of fluorescent proteins.

Authors:  Paula J Cranfill; Brittney R Sell; Michelle A Baird; John R Allen; Zeno Lavagnino; H Martijn de Gruiter; Gert-Jan Kremers; Michael W Davidson; Alessandro Ustione; David W Piston
Journal:  Nat Methods       Date:  2016-05-30       Impact factor: 28.547

10.  Spectral phasor analysis of Pyronin Y labeled RNA microenvironments in living cells.

Authors:  Laura M Andrews; Mark R Jones; Michelle A Digman; Enrico Gratton
Journal:  Biomed Opt Express       Date:  2012-12-19       Impact factor: 3.732

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  41 in total

1.  Phasor S-FLIM: a new paradigm for fast and robust spectral fluorescence lifetime imaging.

Authors:  Lorenzo Scipioni; Alessandro Rossetta; Giulia Tedeschi; Enrico Gratton
Journal:  Nat Methods       Date:  2021-04-15       Impact factor: 28.547

2.  Improved multi-label imaging using hyperspectral phaser analysis.

Authors:  Dustin M Graham
Journal:  Lab Anim (NY)       Date:  2017-02-17       Impact factor: 12.625

3.  Hyperspectral imaging in highly scattering media by the spectral phasor approach using two filters.

Authors:  Alexander Dvornikov; Enrico Gratton
Journal:  Biomed Opt Express       Date:  2018-07-03       Impact factor: 3.732

4.  Frequency-Encoded Multicolor Fluorescence Imaging with Single-Photon-Counting Color-Blind Detection.

Authors:  Erik T Garbacik; Maria Sanz-Paz; Kyra J E Borgman; Felix Campelo; Maria F Garcia-Parajo
Journal:  Biophys J       Date:  2018-07-12       Impact factor: 4.033

5.  Frontiers in Intravital Multiphoton Microscopy of Cancer.

Authors:  Louisiane Perrin; Battuya Bayarmagnai; Bojana Gligorijevic
Journal:  Cancer Rep (Hoboken)       Date:  2019-06-20

6.  Fiber pattern removal and image reconstruction method for snapshot mosaic hyperspectral endoscopic images.

Authors:  Pu Wang; Gianluca Turcatel; Cosimo Arnesano; David Warburton; Scott E Fraser; Francesco Cutrale
Journal:  Biomed Opt Express       Date:  2018-01-25       Impact factor: 3.732

7.  Complex wavelet filter improves FLIM phasors for photon starved imaging experiments.

Authors:  P Wang; F Hecht; G Ossato; S Tille; S E Fraser; J A Junge
Journal:  Biomed Opt Express       Date:  2021-05-17       Impact factor: 3.732

8.  Three-dimensional live multi-label light-sheet imaging with synchronous excitation-multiplexed structured illumination.

Authors:  Dongli Xu; Weibin Zhou; Leilei Peng
Journal:  Opt Express       Date:  2017-12-11       Impact factor: 3.894

9.  In vitro and in vivo phasor analysis of stoichiometry and pharmacokinetics using short-lifetime near-infrared dyes and time-gated imaging.

Authors:  Sez-Jade Chen; Nattawut Sinsuebphon; Alena Rudkouskaya; Margarida Barroso; Xavier Intes; Xavier Michalet
Journal:  J Biophotonics       Date:  2018-12-09       Impact factor: 3.207

10.  Semi-blind sparse affine spectral unmixing of autofluorescence-contaminated micrographs.

Authors:  Blair J Rossetti; Steven A Wilbert; Jessica L Mark Welch; Gary G Borisy; James G Nagy
Journal:  Bioinformatics       Date:  2020-02-01       Impact factor: 6.937

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