Literature DB >> 24040513

Spectral Phasor approach for fingerprinting of photo-activatable fluorescent proteins Dronpa, Kaede and KikGR.

Francesco Cutrale, Anya Salih, Enrico Gratton.   

Abstract

The phasor global analysis algorithm is common for fluorescence lifetime applications, but has only been recently proposed for spectral analysis. Here the phasor representation and fingerprinting is exploited in its second harmonic to determine the number and spectra of photo-activated states as well as their conversion dynamics. We follow the sequence of photo-activation of proteins over time by rapidly collecting multiple spectral images. The phasor representation of the cumulative images provides easy identification of the spectral signatures of each photo-activatable protein.

Entities:  

Year:  2013        PMID: 24040513      PMCID: PMC3771857          DOI: 10.1088/2050-6120/1/3/035001

Source DB:  PubMed          Journal:  Methods Appl Fluoresc        ISSN: 2050-6120            Impact factor:   3.009


  16 in total

1.  An optical marker based on the UV-induced green-to-red photoconversion of a fluorescent protein.

Authors:  Ryoko Ando; Hiroshi Hama; Miki Yamamoto-Hino; Hideaki Mizuno; Atsushi Miyawaki
Journal:  Proc Natl Acad Sci U S A       Date:  2002-09-23       Impact factor: 11.205

2.  Spectral phasor analysis allows rapid and reliable unmixing of fluorescence microscopy spectral images.

Authors:  Farzad Fereidouni; Arjen N Bader; Hans C Gerritsen
Journal:  Opt Express       Date:  2012-06-04       Impact factor: 3.894

Review 3.  Fluorescent proteins and their applications in imaging living cells and tissues.

Authors:  Dmitriy M Chudakov; Mikhail V Matz; Sergey Lukyanov; Konstantin A Lukyanov
Journal:  Physiol Rev       Date:  2010-07       Impact factor: 37.312

4.  Regulated fast nucleocytoplasmic shuttling observed by reversible protein highlighting.

Authors:  Ryoko Ando; Hideaki Mizuno; Atsushi Miyawaki
Journal:  Science       Date:  2004-11-19       Impact factor: 47.728

5.  The phasor approach to fluorescence lifetime imaging analysis.

Authors:  Michelle A Digman; Valeria R Caiolfa; Moreno Zamai; Enrico Gratton
Journal:  Biophys J       Date:  2007-11-02       Impact factor: 4.033

6.  Phasor approach to fluorescence lifetime microscopy distinguishes different metabolic states of germ cells in a live tissue.

Authors:  Chiara Stringari; Amanda Cinquin; Olivier Cinquin; Michelle A Digman; Peter J Donovan; Enrico Gratton
Journal:  Proc Natl Acad Sci U S A       Date:  2011-08-01       Impact factor: 11.205

7.  Label-free separation of human embryonic stem cells and their differentiating progenies by phasor fluorescence lifetime microscopy.

Authors:  Chiara Stringari; Robert Sierra; Peter J Donovan; Enrico Gratton
Journal:  J Biomed Opt       Date:  2012-04       Impact factor: 3.170

8.  Reversible single-molecule photoswitching in the GFP-like fluorescent protein Dronpa.

Authors:  Satoshi Habuchi; Ryoko Ando; Peter Dedecker; Wendy Verheijen; Hideaki Mizuno; Atsushi Miyawaki; Johan Hofkens
Journal:  Proc Natl Acad Sci U S A       Date:  2005-06-22       Impact factor: 11.205

9.  NHE3 regulatory factor 1 (NHERF1) modulates intestinal sodium-dependent phosphate transporter (NaPi-2b) expression in apical microvilli.

Authors:  Hector Giral; DeeAnn Cranston; Luca Lanzano; Yupanqui Caldas; Eileen Sutherland; Joanna Rachelson; Evgenia Dobrinskikh; Edward J Weinman; R Brian Doctor; Enrico Gratton; Moshe Levi
Journal:  J Biol Chem       Date:  2012-08-17       Impact factor: 5.157

10.  Alpha hemolysin induces an increase of erythrocytes calcium: a FLIM 2-photon phasor analysis approach.

Authors:  Susana Sanchez; Laura Bakás; Enrico Gratton; Vanesa Herlax
Journal:  PLoS One       Date:  2011-06-16       Impact factor: 3.240

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  10 in total

1.  Phasor S-FLIM: a new paradigm for fast and robust spectral fluorescence lifetime imaging.

Authors:  Lorenzo Scipioni; Alessandro Rossetta; Giulia Tedeschi; Enrico Gratton
Journal:  Nat Methods       Date:  2021-04-15       Impact factor: 28.547

2.  Hyperspectral phasor analysis enables multiplexed 5D in vivo imaging.

Authors:  Francesco Cutrale; Vikas Trivedi; Le A Trinh; Chi-Li Chiu; John M Choi; Marcela S Artiga; Scott E Fraser
Journal:  Nat Methods       Date:  2017-01-09       Impact factor: 28.547

3.  Phasor plotting with frequency-domain flow cytometry.

Authors:  Ruofan Cao; Patrick Jenkins; William Peria; Bryan Sands; Mark Naivar; Roger Brent; Jessica P Houston
Journal:  Opt Express       Date:  2016-06-27       Impact factor: 3.894

4.  Spectral properties and dynamics of gold nanorods revealed by EMCCD-based spectral phasor method.

Authors:  Hongtao Chen; Enrico Gratton; Michelle A Digman
Journal:  Microsc Res Tech       Date:  2015-02-13       Impact factor: 2.769

5.  Multispectral analysis tools can increase utility of RGB color images in histology.

Authors:  Farzad Fereidouni; Croix Griffin; Austin Todd; Richard Levenson
Journal:  J Opt       Date:  2018-03-15       Impact factor: 2.516

6.  Sorting of Single Biomolecules based on Fourier Polar Representation of Surface Enhanced Raman Spectra.

Authors:  Aymeric Leray; Thibault Brulé; Mickael Buret; Gérard Colas des Francs; Alexandre Bouhelier; Alain Dereux; Eric Finot
Journal:  Sci Rep       Date:  2016-02-02       Impact factor: 4.379

7.  Phasor Analysis of Local ICS Detects Heterogeneity in Size and Number of Intracellular Vesicles.

Authors:  Lorenzo Scipioni; Enrico Gratton; Alberto Diaspro; Luca Lanzanò
Journal:  Biophys J       Date:  2016-08-09       Impact factor: 4.033

Review 8.  Structural and Functional Characterization of Human Stem-Cell-Derived Retinal Organoids by Live Imaging.

Authors:  Andrew W Browne; Cosimo Arnesano; Narine Harutyunyan; Thien Khuu; Juan Carlos Martinez; Harvey A Pollack; David S Koos; Thomas C Lee; Scott E Fraser; Rex A Moats; Jennifer G Aparicio; David Cobrinik
Journal:  Invest Ophthalmol Vis Sci       Date:  2017-07-01       Impact factor: 4.799

9.  Application of Spectral Phasor analysis to sodium microenvironments in myoblast progenitor cells.

Authors:  Hamid Sediqi; Alex Wray; Christopher Jones; Mark Jones
Journal:  PLoS One       Date:  2018-10-31       Impact factor: 3.240

10.  Retinal Organoids Long-Term Functional Characterization Using Two-Photon Fluorescence Lifetime and Hyperspectral Microscopy.

Authors:  Yuntian Xue; Andrew W Browne; William C Tang; Jeffrey Delgado; Bryce T McLelland; Gabriel Nistor; Jacqueline T Chen; Kaylee Chew; Nicolas Lee; Hans S Keirstead; Magdalene J Seiler
Journal:  Front Cell Neurosci       Date:  2021-12-10       Impact factor: 5.505

  10 in total

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