Literature DB >> 34221672

Complex wavelet filter improves FLIM phasors for photon starved imaging experiments.

P Wang1, F Hecht2, G Ossato2, S Tille2, S E Fraser1, J A Junge1.   

Abstract

Fluorescence lifetime imaging microscopy (FLIM) with phasor analysis provides easy visualization and analysis of fluorophores' lifetimes which is valuable for multiple applications including metabolic imaging, STED imaging, FRET imaging and functional imaging. However, FLIM imaging typically suffers from low photon budgets, leading to unfavorable signal to noise ratios which in many cases prevent extraction of information from the data. Traditionally, median filters are applied in phasor analysis to tackle this problem. This unfortunately degrades high spatial frequency FLIM information in the phasor analysis. These high spatial frequency components are typically edges of features and puncta, which applies to membranes, mitochondria, granules and small organelles in a biological sample. To tackle this problem, we propose a filtering strategy with complex wavelet filtering and Anscombe transform for FLIM phasor analysis. This filtering strategy preserves fine structures and reports accurate lifetimes in photon starved FLIM imaging. Moreover, this filter outperforms median filters and makes FLIM imaging with lower laser power and faster imaging possible.
© 2021 Optical Society of America under the terms of the OSA Open Access Publishing Agreement.

Year:  2021        PMID: 34221672      PMCID: PMC8221945          DOI: 10.1364/BOE.420953

Source DB:  PubMed          Journal:  Biomed Opt Express        ISSN: 2156-7085            Impact factor:   3.732


  23 in total

1.  Evaluation of global analysis algorithms for single frequency fluorescence lifetime imaging microscopy data.

Authors:  P J Verveer; P I H Bastiaens
Journal:  J Microsc       Date:  2003-01       Impact factor: 1.758

2.  Fluorescence lifetime imaging.

Authors:  J R Lakowicz; H Szmacinski; K Nowaczyk; K W Berndt; M Johnson
Journal:  Anal Biochem       Date:  1992-05-01       Impact factor: 3.365

Review 3.  Fluorescence lifetime measurements and biological imaging.

Authors:  Mikhail Y Berezin; Samuel Achilefu
Journal:  Chem Rev       Date:  2010-05-12       Impact factor: 60.622

4.  Resolution improvement in STED super-resolution microscopy at low power using a phasor plot approach.

Authors:  Luwei Wang; Bingling Chen; Wei Yan; Zhigang Yang; Xiao Peng; Danying Lin; Xiaoyu Weng; Tong Ye; Junle Qu
Journal:  Nanoscale       Date:  2018-08-30       Impact factor: 7.790

5.  Fluorescence lifetime metabolic mapping of hypoxia-induced damage in pancreatic pseudo-islets.

Authors:  Aline Zbinden; Daniel A Carvajal Berrio; Max Urbanczyk; Shannon L Layland; Mariella Bosch; Sandro Fliri; Chuan-En Lu; Abiramy Jeyagaran; Peter Loskill; Garry P Duffy; Katja Schenke-Layland
Journal:  J Biophotonics       Date:  2020-10-15       Impact factor: 3.207

6.  Biosensor Förster resonance energy transfer detection by the phasor approach to fluorescence lifetime imaging microscopy.

Authors:  Elizabeth Hinde; Michelle A Digman; Christopher Welch; Klaus M Hahn; Enrico Gratton
Journal:  Microsc Res Tech       Date:  2011-08-19       Impact factor: 2.769

7.  Metabolic trajectory of cellular differentiation in small intestine by Phasor Fluorescence Lifetime Microscopy of NADH.

Authors:  Chiara Stringari; Robert A Edwards; Kira T Pate; Marian L Waterman; Peter J Donovan; Enrico Gratton
Journal:  Sci Rep       Date:  2012-08-10       Impact factor: 4.379

8.  A Bayesian method for single molecule, fluorescence burst analysis.

Authors:  P R Barber; S M Ameer-Beg; S Pathmananthan; M Rowley; A C C Coolen
Journal:  Biomed Opt Express       Date:  2010-10-12       Impact factor: 3.732

9.  Developing and Testing a Bayesian Analysis of Fluorescence Lifetime Measurements.

Authors:  Bryan Kaye; Peter J Foster; Tae Yeon Yoo; Daniel J Needleman
Journal:  PLoS One       Date:  2017-01-06       Impact factor: 3.240

10.  Phasor histone FLIM-FRET microscopy quantifies spatiotemporal rearrangement of chromatin architecture during the DNA damage response.

Authors:  Jieqiong Lou; Lorenzo Scipioni; Belinda K Wright; Tara K Bartolec; Jessie Zhang; V Pragathi Masamsetti; Katharina Gaus; Enrico Gratton; Anthony J Cesare; Elizabeth Hinde
Journal:  Proc Natl Acad Sci U S A       Date:  2019-03-27       Impact factor: 11.205

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  4 in total

1.  Live-Cell Fluorescence Lifetime Multiplexing Using Synthetic Fluorescent Probes.

Authors:  Michelle S Frei; Birgit Koch; Julien Hiblot; Kai Johnsson
Journal:  ACS Chem Biol       Date:  2022-05-18       Impact factor: 4.634

2.  Optimization of Advanced Live-Cell Imaging through Red/Near-Infrared Dye Labeling and Fluorescence Lifetime-Based Strategies.

Authors:  Magalie Bénard; Damien Schapman; Christophe Chamot; Fatéméh Dubois; Guénaëlle Levallet; Hitoshi Komuro; Ludovic Galas
Journal:  Int J Mol Sci       Date:  2021-10-14       Impact factor: 5.923

3.  Bladder cancer cells shift rapidly and spontaneously to cisplatin-resistant oxidative phosphorylation that is trackable in real time.

Authors:  Tong Xu; Jason A Junge; Alireza Delfarah; Yi-Tsung Lu; Cosimo Arnesano; Maheen Iqbal; Kevin Delijani; Tien-Chan Hsieh; Emmanuelle Hodara; Hemal H Mehta; Pinchas Cohen; Nicholas A Graham; Scott E Fraser; Amir Goldkorn
Journal:  Sci Rep       Date:  2022-04-01       Impact factor: 4.379

4.  Stimulated emission depletion microscopy with a single depletion laser using five fluorochromes and fluorescence lifetime phasor separation.

Authors:  Mariano Gonzalez Pisfil; Iliya Nadelson; Brigitte Bergner; Sonja Rottmeier; Andreas W Thomae; Steffen Dietzel
Journal:  Sci Rep       Date:  2022-08-18       Impact factor: 4.996

  4 in total

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