Literature DB >> 33859440

Phasor S-FLIM: a new paradigm for fast and robust spectral fluorescence lifetime imaging.

Lorenzo Scipioni1, Alessandro Rossetta2, Giulia Tedeschi1, Enrico Gratton3.   

Abstract

Fluorescence lifetime imaging microscopy (FLIM) and spectral imaging are two broadly applied methods for increasing dimensionality in microscopy. However, their combination is typically inefficient and slow in terms of acquisition and processing. By integrating technological and computational advances, we developed a robust and unbiased spectral FLIM (S-FLIM) system. Our method, Phasor S-FLIM, combines true parallel multichannel digital frequency domain electronics with a multidimensional phasor approach to extract detailed and precise information about the photophysics of fluorescent specimens at optical resolution. To show the flexibility of the Phasor S-FLIM technology and its applications to the biological and biomedical field, we address four common, yet challenging, problems: the blind unmixing of spectral and lifetime signatures from multiple unknown species, the unbiased bleedthrough- and background-free Förster resonance energy transfer analysis of biosensors, the photophysical characterization of environment-sensitive probes in living cells and parallel four-color FLIM imaging in tumor spheroids.

Entities:  

Year:  2021        PMID: 33859440     DOI: 10.1038/s41592-021-01108-4

Source DB:  PubMed          Journal:  Nat Methods        ISSN: 1548-7091            Impact factor:   28.547


  40 in total

1.  Spectral phasor analysis allows rapid and reliable unmixing of fluorescence microscopy spectral images.

Authors:  Farzad Fereidouni; Arjen N Bader; Hans C Gerritsen
Journal:  Opt Express       Date:  2012-06-04       Impact factor: 3.894

2.  Excitation-resolved hyperspectral fluorescence lifetime imaging using a UV-extended supercontinuum source.

Authors:  Dylan M Owen; Egidijus Auksorius; Hugh B Manning; Clifford B Talbot; Pieter A A de Beule; Christopher Dunsby; Mark A A Neil; Paul M W French
Journal:  Opt Lett       Date:  2007-12-01       Impact factor: 3.776

3.  Multiplexing with multispectral imaging: from mice to microscopy.

Authors:  Richard M Levenson; David T Lynch; Hisataka Kobayashi; Joseph M Backer; Marina V Backer
Journal:  ILAR J       Date:  2008

4.  High speed multispectral fluorescence lifetime imaging.

Authors:  Farzad Fereidouni; Keimpe Reitsma; Hans C Gerritsen
Journal:  Opt Express       Date:  2013-05-20       Impact factor: 3.894

5.  Hyperspectral phasor analysis enables multiplexed 5D in vivo imaging.

Authors:  Francesco Cutrale; Vikas Trivedi; Le A Trinh; Chi-Li Chiu; John M Choi; Marcela S Artiga; Scott E Fraser
Journal:  Nat Methods       Date:  2017-01-09       Impact factor: 28.547

6.  Spectral Phasor approach for fingerprinting of photo-activatable fluorescent proteins Dronpa, Kaede and KikGR.

Authors:  Francesco Cutrale; Anya Salih; Enrico Gratton
Journal:  Methods Appl Fluoresc       Date:  2013       Impact factor: 3.009

7.  Differences between FLIM phasor analyses for data collected with the Becker and Hickl SPC830 card and with the FLIMbox card.

Authors:  Suman Ranjit; Leonel Malacrida; Enrico Gratton
Journal:  Microsc Res Tech       Date:  2018-10-08       Impact factor: 2.769

8.  Fit-free analysis of fluorescence lifetime imaging data using the phasor approach.

Authors:  Suman Ranjit; Leonel Malacrida; David M Jameson; Enrico Gratton
Journal:  Nat Protoc       Date:  2018-09       Impact factor: 13.491

9.  Phasor histone FLIM-FRET microscopy quantifies spatiotemporal rearrangement of chromatin architecture during the DNA damage response.

Authors:  Jieqiong Lou; Lorenzo Scipioni; Belinda K Wright; Tara K Bartolec; Jessie Zhang; V Pragathi Masamsetti; Katharina Gaus; Enrico Gratton; Anthony J Cesare; Elizabeth Hinde
Journal:  Proc Natl Acad Sci U S A       Date:  2019-03-27       Impact factor: 11.205

10.  Exploiting the tunability of stimulated emission depletion microscopy for super-resolution imaging of nuclear structures.

Authors:  Maria J Sarmento; Michele Oneto; Simone Pelicci; Luca Pesce; Lorenzo Scipioni; Mario Faretta; Laura Furia; Gaetano Ivan Dellino; Pier Giuseppe Pelicci; Paolo Bianchini; Alberto Diaspro; Luca Lanzanò
Journal:  Nat Commun       Date:  2018-08-24       Impact factor: 14.919

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  12 in total

Review 1.  Live-cell fluorescence spectral imaging as a data science challenge.

Authors:  Jessy Pamela Acuña-Rodriguez; Jean Paul Mena-Vega; Orlando Argüello-Miranda
Journal:  Biophys Rev       Date:  2022-03-23

2.  Live-Cell Fluorescence Lifetime Multiplexing Using Synthetic Fluorescent Probes.

Authors:  Michelle S Frei; Birgit Koch; Julien Hiblot; Kai Johnsson
Journal:  ACS Chem Biol       Date:  2022-05-18       Impact factor: 4.634

3.  High Resolution Fluorescence Lifetime Maps from Minimal Photon Counts.

Authors:  Mohamadreza Fazel; Sina Jazani; Lorenzo Scipioni; Alexander Vallmitjana; Enrico Gratton; Michelle A Digman; Steve Pressé
Journal:  ACS Photonics       Date:  2022-02-10       Impact factor: 7.077

4.  Simultaneous amplification of multiple immunofluorescence signals via cyclic staining of target molecules using mutually cross-adsorbed antibodies.

Authors:  Haemin Yeon; Yehlin Cho; Junyoung Seo; Yeonbo Sim; Jae-Byum Chang
Journal:  Sci Rep       Date:  2022-05-24       Impact factor: 4.996

5.  Spatial transcriptomics using combinatorial fluorescence spectral and lifetime encoding, imaging and analysis.

Authors:  Tam Vu; Alexander Vallmitjana; Joshua Gu; Kieu La; Qi Xu; Jesus Flores; Jan Zimak; Jessica Shiu; Linzi Hosohama; Jie Wu; Christopher Douglas; Marian L Waterman; Anand Ganesan; Per Niklas Hedde; Enrico Gratton; Weian Zhao
Journal:  Nat Commun       Date:  2022-01-10       Impact factor: 14.919

6.  Engineered HaloTag variants for fluorescence lifetime multiplexing.

Authors:  Michelle S Frei; Miroslaw Tarnawski; M Julia Roberti; Birgit Koch; Julien Hiblot; Kai Johnsson
Journal:  Nat Methods       Date:  2021-12-16       Impact factor: 28.547

7.  Lifetime-based analysis of binary fluorophores mixtures in the low photon count limit.

Authors:  Maisa Nasser; Amit Meller
Journal:  iScience       Date:  2021-12-02

8.  Super-Multiplex Nonlinear Optical Imaging Unscrambles the Statistical Complexity of Cancer Subtypes and Tumor Microenvironment.

Authors:  Yanping Li; Binglin Shen; Gengjin Zou; Rui Hu; Ying Pan; Junle Qu; Liwei Liu
Journal:  Adv Sci (Weinh)       Date:  2021-12-19       Impact factor: 16.806

9.  PICASSO allows ultra-multiplexed fluorescence imaging of spatially overlapping proteins without reference spectra measurements.

Authors:  Junyoung Seo; Yeonbo Sim; Jeewon Kim; Hyunwoo Kim; In Cho; Hoyeon Nam; Young-Gyu Yoon; Jae-Byum Chang
Journal:  Nat Commun       Date:  2022-05-05       Impact factor: 17.694

10.  NAD(P)H fluorescence lifetime imaging of live intestinal nematodes reveals metabolic crosstalk between parasite and host.

Authors:  Wjatscheslaw Liublin; Sebastian Rausch; Ruth Leben; Randall L Lindquist; Alexander Fiedler; Juliane Liebeskind; Ingeborg E Beckers; Anja E Hauser; Susanne Hartmann; Raluca A Niesner
Journal:  Sci Rep       Date:  2022-05-04       Impact factor: 4.996

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