Literature DB >> 32428498

Evolutionary Repair Experiments as a Window to the Molecular Diversity of Life.

Thomas LaBar1, Yu-Ying Phoebe Hsieh2, Marco Fumasoni3, Andrew W Murray4.   

Abstract

Comparative genomics reveals an unexpected diversity in the molecular mechanisms underlying conserved cellular functions, such as DNA replication and cytokinesis. However, the genetic bases and evolutionary processes underlying this 'molecular diversity' remain to be explained. Here, we review a tool to generate alternative mechanisms for conserved cellular functions and test hypotheses concerning the generation of molecular diversity - evolutionary repair experiments, in which laboratory microbial populations adapt in response to a genetic perturbation. We summarize the insights gained from evolutionary repair experiments, the spectrum and dynamics of compensatory mutations, and the alternative molecular mechanisms used to repair perturbed cellular functions. We relate these experiments to the modifications of conserved functions that have occurred outside the laboratory. We end by proposing strategies to improve evolutionary repair experiments as a tool to explore the molecular diversity of life.
Copyright © 2020 Elsevier Inc. All rights reserved.

Entities:  

Year:  2020        PMID: 32428498      PMCID: PMC7295036          DOI: 10.1016/j.cub.2020.03.046

Source DB:  PubMed          Journal:  Curr Biol        ISSN: 0960-9822            Impact factor:   10.834


  96 in total

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Review 3.  Experimental Evolution as a Tool to Investigate Natural Processes and Molecular Functions.

Authors:  Philippe Remigi; Catherine Masson-Boivin; Eduardo P C Rocha
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4.  Pseudogene repair driven by selection pressure applied in experimental evolution.

Authors:  Amitesh Anand; Connor A Olson; Laurence Yang; Anand V Sastry; Edward Catoiu; Kumari Sonal Choudhary; Patrick V Phaneuf; Troy E Sandberg; Sibei Xu; Ying Hefner; Richard Szubin; Adam M Feist; Bernhard O Palsson
Journal:  Nat Microbiol       Date:  2019-01-28       Impact factor: 17.745

5.  Stepwise evolution of the centriole-assembly pathway.

Authors:  Zita Carvalho-Santos; Pedro Machado; Pedro Branco; Filipe Tavares-Cadete; Ana Rodrigues-Martins; José B Pereira-Leal; Mónica Bettencourt-Dias
Journal:  J Cell Sci       Date:  2010-04-14       Impact factor: 5.285

6.  The fitness consequences of aneuploidy are driven by condition-dependent gene effects.

Authors:  Anna B Sunshine; Celia Payen; Giang T Ong; Ivan Liachko; Kean Ming Tan; Maitreya J Dunham
Journal:  PLoS Biol       Date:  2015-05-26       Impact factor: 8.029

7.  Mutations that improve efficiency of a weak-link enzyme are rare compared to adaptive mutations elsewhere in the genome.

Authors:  Andrew B Morgenthaler; Wallis R Kinney; Christopher C Ebmeier; Corinne M Walsh; Daniel J Snyder; Vaughn S Cooper; William M Old; Shelley D Copley
Journal:  Elife       Date:  2019-12-09       Impact factor: 8.140

8.  Discovery of unconventional kinetochores in kinetoplastids.

Authors:  Bungo Akiyoshi; Keith Gull
Journal:  Cell       Date:  2014-02-27       Impact factor: 41.582

9.  Evidence for loss and reacquisition of alcoholic fermentation in a fructophilic yeast lineage.

Authors:  Carla Gonçalves; Jennifer H Wisecaver; Jacek Kominek; Madalena Salema Oom; Maria José Leandro; Xing-Xing Shen; Dana A Opulente; Xiaofan Zhou; David Peris; Cletus P Kurtzman; Chris Todd Hittinger; Antonis Rokas; Paula Gonçalves
Journal:  Elife       Date:  2018-04-12       Impact factor: 8.140

10.  Evolutionary repair: Changes in multiple functional modules allow meiotic cohesin to support mitosis.

Authors:  Yu-Ying Phoebe Hsieh; Vasso Makrantoni; Daniel Robertson; Adèle L Marston; Andrew W Murray
Journal:  PLoS Biol       Date:  2020-03-10       Impact factor: 8.029

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  7 in total

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Authors:  Zoltán Farkas; Károly Kovács; Zsuzsa Sarkadi; Dorottya Kalapis; Gergely Fekete; Fanni Birtyik; Ferhan Ayaydin; Csaba Molnár; Péter Horváth; Csaba Pál; Balázs Papp
Journal:  Nat Ecol Evol       Date:  2022-04-28       Impact factor: 19.100

2.  Epistasis, aneuploidy, and functional mutations underlie evolution of resistance to induced microtubule depolymerization.

Authors:  Mattia Pavani; Paolo Bonaiuti; Elena Chiroli; Fridolin Gross; Federica Natali; Francesca Macaluso; Ádám Póti; Sebastiano Pasqualato; Zoltán Farkas; Simone Pompei; Marco Cosentino Lagomarsino; Giulia Rancati; Dávid Szüts; Andrea Ciliberto
Journal:  EMBO J       Date:  2021-10-04       Impact factor: 11.598

3.  Genetic interaction network has a very limited impact on the evolutionary trajectories in continuous culture-grown populations of yeast.

Authors:  Joanna Klim; Urszula Zielenkiewicz; Marek Skoneczny; Adrianna Skoneczna; Anna Kurlandzka; Szymon Kaczanowski
Journal:  BMC Ecol Evol       Date:  2021-05-26

4.  Evolutionary repair reveals an unexpected role of the tRNA modification m1G37 in aminoacylation.

Authors:  Ben E Clifton; Muhammad A Fariz; Gen-Ichiro Uechi; Paola Laurino
Journal:  Nucleic Acids Res       Date:  2021-12-02       Impact factor: 16.971

5.  Ploidy and recombination proficiency shape the evolutionary adaptation to constitutive DNA replication stress.

Authors:  Marco Fumasoni; Andrew W Murray
Journal:  PLoS Genet       Date:  2021-11-09       Impact factor: 5.917

6.  Mitotic spindle formation in the absence of Polo kinase.

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7.  Evolutionary rescue of phosphomannomutase deficiency in yeast models of human disease.

Authors:  Ryan C Vignogna; Mariateresa Allocca; Maria Monticelli; Joy W Norris; Richard Steet; Ethan O Perlstein; Giuseppina Andreotti; Gregory I Lang
Journal:  Elife       Date:  2022-10-10       Impact factor: 8.713

  7 in total

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