Literature DB >> 19540940

Mechanism and evolution of DNA primases.

Robert D Kuchta1, Gudrun Stengel.   

Abstract

DNA primase synthesizes short RNA primers that replicative polymerases further elongate in order to initiate the synthesis of all new DNA strands. Thus, primase owes its existence to the inability of DNA polymerases to initiate DNA synthesis starting with 2 dNTPs. Here, we discuss the evolutionary relationships between the different families of primases (viral, eubacterial, archael, and eukaryotic) and the catalytic mechanisms of these enzymes. This includes how they choose an initiation site, elongate the growing primer, and then only synthesize primers of defined length via an inherent ability to count. Finally, the low fidelity of primases along with the development of primase inhibitors is described. Copyright (c) 2010 Elsevier B.V. All rights reserved.

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Year:  2009        PMID: 19540940      PMCID: PMC2846230          DOI: 10.1016/j.bbapap.2009.06.011

Source DB:  PubMed          Journal:  Biochim Biophys Acta        ISSN: 0006-3002


  92 in total

1.  The linker region between the helicase and primase domains of the bacteriophage T7 gene 4 protein is critical for hexamer formation.

Authors:  S Guo; S Tabor; C C Richardson
Journal:  J Biol Chem       Date:  1999-10-15       Impact factor: 5.157

2.  The heterodimeric primase of the hyperthermophilic archaeon Sulfolobus solfataricus possesses DNA and RNA primase, polymerase and 3'-terminal nucleotidyl transferase activities.

Authors:  Si-houy Lao-Sirieix; Stephen D Bell
Journal:  J Mol Biol       Date:  2004-12-10       Impact factor: 5.469

3.  Crosstalk between primase subunits can act to regulate primer synthesis in trans.

Authors:  Jacob E Corn; Paul J Pease; Greg L Hura; James M Berger
Journal:  Mol Cell       Date:  2005-11-11       Impact factor: 17.970

4.  Structure of the heterodimeric core primase.

Authors:  Si-Houy Lao-Sirieix; Ravi K Nookala; Pietro Roversi; Stephen D Bell; Luca Pellegrini
Journal:  Nat Struct Mol Biol       Date:  2005-11-06       Impact factor: 15.369

5.  The oligomeric T4 primase is the functional form during replication.

Authors:  Jingsong Yang; Jun Xi; Zhihao Zhuang; Stephen J Benkovic
Journal:  J Biol Chem       Date:  2005-05-15       Impact factor: 5.157

6.  Herpes simplex virus 1 primase employs watson-crick hydrogen bonding to identify cognate nucleoside triphosphates.

Authors:  Kathryn A Ramirez-Aguilar; Chad L Moore; Robert D Kuchta
Journal:  Biochemistry       Date:  2005-11-29       Impact factor: 3.162

7.  Interactions of DNA with human DNA primase monitored with photoactivatable cross-linking agents: implications for the role of the p58 subunit.

Authors:  B Arezi; B W Kirk; W C Copeland; R D Kuchta
Journal:  Biochemistry       Date:  1999-09-28       Impact factor: 3.162

8.  Arg304 of human DNA primase is a key contributor to catalysis and NTP binding: primase and the family X polymerases share significant sequence homology.

Authors:  B W Kirk; R D Kuchta
Journal:  Biochemistry       Date:  1999-06-15       Impact factor: 3.162

9.  Human DNA primase: anion inhibition, manganese stimulation, and their effects on in vitro start-site selection.

Authors:  B W Kirk; R D Kuchta
Journal:  Biochemistry       Date:  1999-08-03       Impact factor: 3.162

10.  Origin and evolution of the archaeo-eukaryotic primase superfamily and related palm-domain proteins: structural insights and new members.

Authors:  Lakshminarayan M Iyer; Eugene V Koonin; Detlef D Leipe; L Aravind
Journal:  Nucleic Acids Res       Date:  2005-07-15       Impact factor: 16.971

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  75 in total

1.  Structural basis for the interaction of a hexameric replicative helicase with the regulatory subunit of human DNA polymerase α-primase.

Authors:  Bo Zhou; Diana R Arnett; Xian Yu; Aaron Brewster; Gregory A Sowd; Charlies L Xie; Stefan Vila; Dahai Gai; Ellen Fanning; Xiaojiang S Chen
Journal:  J Biol Chem       Date:  2012-06-14       Impact factor: 5.157

2.  Insights into eukaryotic DNA priming from the structure and functional interactions of the 4Fe-4S cluster domain of human DNA primase.

Authors:  Sivaraja Vaithiyalingam; Eric M Warren; Brandt F Eichman; Walter J Chazin
Journal:  Proc Natl Acad Sci U S A       Date:  2010-07-19       Impact factor: 11.205

3.  Structure of a DNA polymerase alpha-primase domain that docks on the SV40 helicase and activates the viral primosome.

Authors:  Hao Huang; Brian E Weiner; Haijiang Zhang; Brian E Fuller; Yue Gao; Brian M Wile; Kun Zhao; Diana R Arnett; Walter J Chazin; Ellen Fanning
Journal:  J Biol Chem       Date:  2010-03-16       Impact factor: 5.157

4.  Insight into the Human DNA Primase Interaction with Template-Primer.

Authors:  Andrey G Baranovskiy; Yinbo Zhang; Yoshiaki Suwa; Jianyou Gu; Nigar D Babayeva; Youri I Pavlov; Tahir H Tahirov
Journal:  J Biol Chem       Date:  2015-12-28       Impact factor: 5.157

5.  Redox Chemistry in the Genome: Emergence of the [4Fe4S] Cofactor in Repair and Replication.

Authors:  Jacqueline K Barton; Rebekah M B Silva; Elizabeth O'Brien
Journal:  Annu Rev Biochem       Date:  2019-06-20       Impact factor: 23.643

Review 6.  Replication-fork dynamics.

Authors:  Karl E Duderstadt; Rodrigo Reyes-Lamothe; Antoine M van Oijen; David J Sherratt
Journal:  Cold Spring Harb Perspect Biol       Date:  2014-01-01       Impact factor: 10.005

Review 7.  Archaeology of eukaryotic DNA replication.

Authors:  Kira S Makarova; Eugene V Koonin
Journal:  Cold Spring Harb Perspect Biol       Date:  2013-11-01       Impact factor: 10.005

8.  Bacterial and Eukaryotic Replisome Machines.

Authors:  Nina Yao; Mike O'Donnell
Journal:  JSM Biochem Mol Biol       Date:  2016-05-30

9.  hPrimpol1/CCDC111 is a human DNA primase-polymerase required for the maintenance of genome integrity.

Authors:  Li Wan; Jiangman Lou; Yisui Xia; Bei Su; Ting Liu; Jiamin Cui; Yingying Sun; Huiqiang Lou; Jun Huang
Journal:  EMBO Rep       Date:  2013-10-15       Impact factor: 8.807

10.  Structures of human primase reveal design of nucleotide elongation site and mode of Pol α tethering.

Authors:  Mairi Louise Kilkenny; Michael Anthony Longo; Rajika L Perera; Luca Pellegrini
Journal:  Proc Natl Acad Sci U S A       Date:  2013-09-16       Impact factor: 11.205

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