Literature DB >> 28018008

Van't Hoff global analyses of variable temperature isothermal titration calorimetry data.

Lee A Freiburger1, Karine Auclair1, Anthony K Mittermaier1.   

Abstract

Isothermal titration calorimetry (ITC) can provide detailed information on the thermodynamics of biomolecular interactions in the form of equilibrium constants, KA , and enthalpy changes, ΔHA . A powerful application of this technique involves analyzing the temperature dependences of ITC-derived KA and ΔHA values to gain insight into thermodynamic linkage between binding and additional equilibria, such as protein folding. We recently developed a general method for global analysis of variable temperature ITC data that significantly improves the accuracy of extracted thermodynamic parameters and requires no prior knowledge of the coupled equilibria. Here we report detailed validation of this method using Monte Carlo simulations and an application to study coupled folding and binding in an aminoglycoside acetyltransferase enzyme.

Keywords:  Aminoglycoside acetyltransferase; Coupled equilibria; Enthalpy; Heat capacity; Protein folding

Year:  2012        PMID: 28018008      PMCID: PMC5179259          DOI: 10.1016/j.tca.2011.10.018

Source DB:  PubMed          Journal:  Thermochim Acta        ISSN: 0040-6031            Impact factor:   3.115


  32 in total

Review 1.  Heat capacity in proteins.

Authors:  Ninad V Prabhu; Kim A Sharp
Journal:  Annu Rev Phys Chem       Date:  2005       Impact factor: 12.703

2.  Optimizing experimental parameters in isothermal titration calorimetry.

Authors:  Joel Tellinghuisen
Journal:  J Phys Chem B       Date:  2005-10-27       Impact factor: 2.991

3.  Studying multisite binary and ternary protein interactions by global analysis of isothermal titration calorimetry data in SEDPHAT: application to adaptor protein complexes in cell signaling.

Authors:  Jon C D Houtman; Patrick H Brown; Brent Bowden; Hiroshi Yamaguchi; Ettore Appella; Lawrence E Samelson; Peter Schuck
Journal:  Protein Sci       Date:  2007-01       Impact factor: 6.725

4.  A comprehensive calorimetric investigation of an entropically driven T cell receptor-peptide/major histocompatibility complex interaction.

Authors:  Kathryn M Armstrong; Brian M Baker
Journal:  Biophys J       Date:  2007-04-20       Impact factor: 4.033

5.  Evaluation of linked protonation effects in protein binding reactions using isothermal titration calorimetry.

Authors:  B M Baker; K P Murphy
Journal:  Biophys J       Date:  1996-10       Impact factor: 4.033

6.  Role of the hydrophobic effect in stability of site-specific protein-DNA complexes.

Authors:  J H Ha; R S Spolar; M T Record
Journal:  J Mol Biol       Date:  1989-10-20       Impact factor: 5.469

7.  Overexpression and characterization of the chromosomal aminoglycoside 6'-N-acetyltransferase from Enterococcus faecium.

Authors:  G D Wright; P Ladak
Journal:  Antimicrob Agents Chemother       Date:  1997-05       Impact factor: 5.191

8.  Temperature-dependent delta C0p generated by a shift in equilibrium between macrostates of an enzyme.

Authors:  H F Fisher; A H Colen; R T Medary
Journal:  Nature       Date:  1981-07-16       Impact factor: 49.962

9.  Phage T4 lysozyme. Physical properties and reversible unfolding.

Authors:  M Elwell; J Schellman
Journal:  Biochim Biophys Acta       Date:  1975-03-28

10.  Molecular recognition via coupled folding and binding in a TPR domain.

Authors:  Matthew J Cliff; Mark A Williams; John Brooke-Smith; David Barford; John E Ladbury
Journal:  J Mol Biol       Date:  2005-01-18       Impact factor: 5.469

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  4 in total

1.  pytc: Open-Source Python Software for Global Analyses of Isothermal Titration Calorimetry Data.

Authors:  Hiranmayi Duvvuri; Lucas C Wheeler; Michael J Harms
Journal:  Biochemistry       Date:  2018-04-18       Impact factor: 3.162

Review 2.  Global ITC fitting methods in studies of protein allostery.

Authors:  Lee Freiburger; Karine Auclair; Anthony Mittermaier
Journal:  Methods       Date:  2015-01-05       Impact factor: 3.608

3.  Understanding and overcoming aminoglycoside resistance caused by N-6'-acetyltransferase.

Authors:  Kenward Vong; Karine Auclair
Journal:  Medchemcomm       Date:  2012-04-01       Impact factor: 3.597

Review 4.  Thermodynamic and NMR Assessment of Ligand Cooperativity and Intersubunit Communication in Symmetric Dimers: Application to Thymidylate Synthase.

Authors:  Andrew L Lee; Paul J Sapienza
Journal:  Front Mol Biosci       Date:  2018-05-25
  4 in total

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