Literature DB >> 15713458

Molecular recognition via coupled folding and binding in a TPR domain.

Matthew J Cliff1, Mark A Williams, John Brooke-Smith, David Barford, John E Ladbury.   

Abstract

The majority of known tetratricopeptide repeat (TPR) domains consist of three copies of the helix-turn-helix TPR motif, together with a seventh C-terminal helix. TPR domains function as protein-protein recognition modules in intracellular signalling. This function is exemplified by the TPR domain of protein phosphatase 5 (PP5), which binds to the C terminus of the chaperone protein Hsp90. Here, we report NMR and CD spectroscopic studies that reveal that this domain is largely unfolded at physiological temperatures, and that interaction with an MEEVD pentapeptide derived from Hsp90 stabilises a folded structure. This complex, coupled folding-binding mechanism is characterised further by its observed enthalpy change on binding (determined by isothermal titration calorimetry), which displays a markedly non-linear relationship with temperature. A nested Gibbs-Helmholtz model is used in a novel combined analysis of the CD and ITC data to determine separately the thermodynamic contributions of the intrinsic folding and binding events to the overall coupled process. The analysis shows that, despite the expected large entropic opposition to the folding process, a nearly equal favourable folding enthalpy means the net effect of coupled folding on the observed affinity is small across a broad range of temperature. We hypothesise that a coupled folding-binding mechanism is common in this class of domains.

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Year:  2005        PMID: 15713458     DOI: 10.1016/j.jmb.2004.12.017

Source DB:  PubMed          Journal:  J Mol Biol        ISSN: 0022-2836            Impact factor:   5.469


  39 in total

1.  The RelA nuclear localization signal folds upon binding to IκBα.

Authors:  Carla F Cervantes; Simon Bergqvist; Magnus Kjaergaard; Gerard Kroon; Shih-Che Sue; H Jane Dyson; Elizabeth A Komives
Journal:  J Mol Biol       Date:  2010-11-19       Impact factor: 5.469

2.  Structure of minimal tetratricopeptide repeat domain protein Tah1 reveals mechanism of its interaction with Pih1 and Hsp90.

Authors:  Beatriz Jiménez; Francisca Ugwu; Rongmin Zhao; Leticia Ortí; Taras Makhnevych; Antonio Pineda-Lucena; Walid A Houry
Journal:  J Biol Chem       Date:  2011-12-16       Impact factor: 5.157

3.  Overlap between folding and functional energy landscapes for adenylate kinase conformational change.

Authors:  Ulrika Olsson; Magnus Wolf-Watz
Journal:  Nat Commun       Date:  2010-11-16       Impact factor: 14.919

4.  Thermodynamics reveal that helix four in the NLS of NF-kappaB p65 anchors IkappaBalpha, forming a very stable complex.

Authors:  Simon Bergqvist; Carrie H Croy; Magnus Kjaergaard; Tom Huxford; Gourisankar Ghosh; Elizabeth A Komives
Journal:  J Mol Biol       Date:  2006-05-19       Impact factor: 5.469

5.  The conserved N-terminal region of the mitotic checkpoint protein BUBR1: a putative TPR motif of high surface activity.

Authors:  V M Bolanos-Garcia; S Beaufils; A Renault; J G Grossmann; S Brewerton; M Lee; A Venkitaraman; T L Blundell
Journal:  Biophys J       Date:  2005-07-22       Impact factor: 4.033

6.  Ligand binding by TPR domains.

Authors:  Aitziber L Cortajarena; Lynne Regan
Journal:  Protein Sci       Date:  2006-05       Impact factor: 6.725

7.  Prevalence of temperature-dependent heat capacity changes in protein-DNA interactions.

Authors:  Chin-Chi Liu; Allison J Richard; Kausiki Datta; Vince J LiCata
Journal:  Biophys J       Date:  2008-01-16       Impact factor: 4.033

8.  Efficient coupling of catalysis and dynamics in the E1 component of Escherichia coli pyruvate dehydrogenase multienzyme complex.

Authors:  Sachin Kale; Gözde Ulas; Jaeyoung Song; Gary W Brudvig; William Furey; Frank Jordan
Journal:  Proc Natl Acad Sci U S A       Date:  2008-01-23       Impact factor: 11.205

9.  The molecular chaperone Hsp70 activates protein phosphatase 5 (PP5) by binding the tetratricopeptide repeat (TPR) domain.

Authors:  Jamie N Connarn; Victoria A Assimon; Rebecca A Reed; Eric Tse; Daniel R Southworth; Erik R P Zuiderweg; Jason E Gestwicki; Duxin Sun
Journal:  J Biol Chem       Date:  2013-12-10       Impact factor: 5.157

10.  Molecular basis for TPR domain-mediated regulation of protein phosphatase 5.

Authors:  Jing Yang; S Mark Roe; Matthew J Cliff; Mark A Williams; John E Ladbury; Patricia T W Cohen; David Barford
Journal:  EMBO J       Date:  2004-12-02       Impact factor: 11.598

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