Literature DB >> 27982727

Insights into circular RNA biology.

Karoline K Ebbesen1,2, Thomas B Hansen1, Jørgen Kjems1,2.   

Abstract

Circular RNAs (circRNAs) are a novel class of non-coding RNA characterized by a covalently closed-loop structure generated through a special type of alternative splicing termed backsplicing. CircRNAs are emerging as a heterogeneous class of molecules involved in modulating gene expression by regulation of transcription, protein and miRNA functions. CircRNA expression is cell type and tissue specific and can be largely independent of the expression level of the linear host gene, indicating that regulation of expression might be an important aspect with regard to control of circRNA function. In this review, a brief introduction to the characteristics that define a circRNA will be given followed by a discussion of putative biogenesis pathways and modulators of circRNA expression as well as of the stage at which circRNA formation takes place. A brief summary of circRNA functions will also be provided and lastly, an outlook with a focus on unanswered questions regarding circRNA biology will be included.

Keywords:  Alternative splicing; backsplicing; biogenesis; circRNA; circular RNA; inverted repeats

Mesh:

Substances:

Year:  2016        PMID: 27982727      PMCID: PMC5680708          DOI: 10.1080/15476286.2016.1271524

Source DB:  PubMed          Journal:  RNA Biol        ISSN: 1547-6286            Impact factor:   4.652


  75 in total

1.  Scrambled exons.

Authors:  J M Nigro; K R Cho; E R Fearon; S E Kern; J M Ruppert; J D Oliner; K W Kinzler; B Vogelstein
Journal:  Cell       Date:  1991-02-08       Impact factor: 41.582

Review 2.  Spliceosome structure and function.

Authors:  Cindy L Will; Reinhard Lührmann
Journal:  Cold Spring Harb Perspect Biol       Date:  2011-07-01       Impact factor: 10.005

Review 3.  Circular RNAs: Unexpected outputs of many protein-coding genes.

Authors:  Jeremy E Wilusz
Journal:  RNA Biol       Date:  2016-08-29       Impact factor: 4.652

Review 4.  Functions and regulation of RNA editing by ADAR deaminases.

Authors:  Kazuko Nishikura
Journal:  Annu Rev Biochem       Date:  2010       Impact factor: 23.643

5.  An intron element modulating 5' splice site selection in the hnRNP A1 pre-mRNA interacts with hnRNP A1.

Authors:  B Chabot; M Blanchette; I Lapierre; H La Branche
Journal:  Mol Cell Biol       Date:  1997-04       Impact factor: 4.272

6.  Detecting and characterizing circular RNAs.

Authors:  William R Jeck; Norman E Sharpless
Journal:  Nat Biotechnol       Date:  2014-05       Impact factor: 54.908

7.  Circular intronic long noncoding RNAs.

Authors:  Yang Zhang; Xiao-Ou Zhang; Tian Chen; Jian-Feng Xiang; Qing-Fei Yin; Yu-Hang Xing; Shanshan Zhu; Li Yang; Ling-Ling Chen
Journal:  Mol Cell       Date:  2013-09-12       Impact factor: 17.970

Review 8.  The ADAR protein family.

Authors:  Yiannis A Savva; Leila E Rieder; Robert A Reenan
Journal:  Genome Biol       Date:  2012-12-28       Impact factor: 13.583

9.  Circular non-coding RNA ANRIL modulates ribosomal RNA maturation and atherosclerosis in humans.

Authors:  Lesca M Holdt; Anika Stahringer; Kristina Sass; Garwin Pichler; Nils A Kulak; Wolfgang Wilfert; Alexander Kohlmaier; Andreas Herbst; Bernd H Northoff; Alexandros Nicolaou; Gabor Gäbel; Frank Beutner; Markus Scholz; Joachim Thiery; Kiran Musunuru; Knut Krohn; Matthias Mann; Daniel Teupser
Journal:  Nat Commun       Date:  2016-08-19       Impact factor: 14.919

10.  Combinatorial control of Drosophila circular RNA expression by intronic repeats, hnRNPs, and SR proteins.

Authors:  Marianne C Kramer; Dongming Liang; Deirdre C Tatomer; Beth Gold; Zachary M March; Sara Cherry; Jeremy E Wilusz
Journal:  Genes Dev       Date:  2015-10-08       Impact factor: 11.361

View more
  138 in total

1.  Characterization and Cloning of Grape Circular RNAs Identified the Cold Resistance-Related Vv-circATS1.

Authors:  Zhen Gao; Jing Li; Meng Luo; Hui Li; Qiuju Chen; Lei Wang; Shiren Song; Liping Zhao; Wenping Xu; Caixi Zhang; Shiping Wang; Chao Ma
Journal:  Plant Physiol       Date:  2019-04-08       Impact factor: 8.340

2.  A Network of Noncoding Regulatory RNAs Acts in the Mammalian Brain.

Authors:  Benjamin Kleaveland; Charlie Y Shi; Joanna Stefano; David P Bartel
Journal:  Cell       Date:  2018-06-07       Impact factor: 41.582

3.  Engineering and expressing circular RNAs via tRNA splicing.

Authors:  John J Noto; Casey A Schmidt; A Gregory Matera
Journal:  RNA Biol       Date:  2017-04-12       Impact factor: 4.652

4.  Circular RNA circ-ABCB10 promotes breast cancer proliferation and progression through sponging miR-1271.

Authors:  Hai-Feng Liang; Xing-Zeng Zhang; Bao-Guo Liu; Guo-Tao Jia; Wen-Lei Li
Journal:  Am J Cancer Res       Date:  2017-07-01       Impact factor: 6.166

5.  Hsa_circ_0045714 regulates chondrocyte proliferation, apoptosis and extracellular matrix synthesis by promoting the expression of miR-193b target gene IGF1R.

Authors:  Bao-Feng Li; Ying Zhang; Jin Xiao; Fei Wang; Mei Li; Xiao-Ze Guo; Hui-Bin Xie; Hong Xia; Bei Chen
Journal:  Hum Cell       Date:  2017-08-09       Impact factor: 4.174

6.  A Circular RNA from the MDM2 Locus Controls Cell Cycle Progression by Suppressing p53 Levels.

Authors:  Ritu Chaudhary; Bruna R Muys; Ioannis Grammatikakis; Supriyo De; Kotb Abdelmohsen; Xiao Ling Li; Yuelin Zhu; Swapna Vidhur Daulatabad; Dimitrios Tsitsipatis; Paul S Meltzer; Myriam Gorospe; Sarath Chandra Janga; Ashish Lal
Journal:  Mol Cell Biol       Date:  2020-04-13       Impact factor: 4.272

7.  Down-regulation of circ-PRKCI inhibits cell migration and proliferation in Hirschsprung disease by suppressing the expression of miR-1324 target PLCB1.

Authors:  Lingling Zhou; Yang Li; Weiwei Jiang; Hua Zhang; Zechao Wen; Yang Su; Feng Wu; Zhengke Zhi; Qiyang Shen; Hongxing Li; Xiaoqun Xu; Weibing Tang
Journal:  Cell Cycle       Date:  2018-07-09       Impact factor: 4.534

8.  Analysis of the circular RNA transcriptome in the grade 3 endometrial cancer.

Authors:  Fei Ye; Qiong Lan Tang; Fang Ma; Lei Cai; Ming Chen; Xiao Xia Ran; Xiao Yu Wang; Xue Feng Jiang
Journal:  Cancer Manag Res       Date:  2019-07-05       Impact factor: 3.989

9.  The Landscape of Circular RNA in Cancer.

Authors:  Josh N Vo; Marcin Cieslik; Yajia Zhang; Sudhanshu Shukla; Lanbo Xiao; Yuping Zhang; Yi-Mi Wu; Saravana M Dhanasekaran; Carl G Engelke; Xuhong Cao; Dan R Robinson; Alexey I Nesvizhskii; Arul M Chinnaiyan
Journal:  Cell       Date:  2019-02-07       Impact factor: 41.582

10.  Circular RNA has_circ_0000034 accelerates retinoblastoma advancement through the miR-361-3p/ADAM19 axis.

Authors:  Yanhua Jiang; Fan Xiao; Lin Wang; Ting Wang; Linlin Chen
Journal:  Mol Cell Biochem       Date:  2020-08-25       Impact factor: 3.396

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.