Literature DB >> 24811520

Detecting and characterizing circular RNAs.

William R Jeck1, Norman E Sharpless2.   

Abstract

Circular RNA transcripts were first identified in the early 1990s but knowledge of these species has remained limited, as their study through traditional methods of RNA analysis has been difficult. Now, novel bioinformatic approaches coupled with biochemical enrichment strategies and deep sequencing have allowed comprehensive studies of circular RNA species. Recent studies have revealed thousands of endogenous circular RNAs in mammalian cells, some of which are highly abundant and evolutionarily conserved. Evidence is emerging that some circRNAs might regulate microRNA (miRNA) function, and roles in transcriptional control have also been suggested. Therefore, study of this class of noncoding RNAs has potential implications for therapeutic and research applications. We believe the key future challenge for the field will be to understand the regulation and function of these unusual molecules.

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Year:  2014        PMID: 24811520      PMCID: PMC4121655          DOI: 10.1038/nbt.2890

Source DB:  PubMed          Journal:  Nat Biotechnol        ISSN: 1087-0156            Impact factor:   54.908


  51 in total

1.  Global analysis of trans-splicing in Drosophila.

Authors:  C Joel McManus; Michael O Duff; Jodi Eipper-Mains; Brenton R Graveley
Journal:  Proc Natl Acad Sci U S A       Date:  2010-07-01       Impact factor: 11.205

2.  Scrambled exons.

Authors:  J M Nigro; K R Cho; E R Fearon; S E Kern; J M Ruppert; J D Oliner; K W Kinzler; B Vogelstein
Journal:  Cell       Date:  1991-02-08       Impact factor: 41.582

3.  Differential expression of cytochrome P450 2C24 transcripts in rat kidney and prostate: evidence indicative of alternative and possibly trans splicing events.

Authors:  P G Zaphiropoulos
Journal:  Biochem Biophys Res Commun       Date:  1993-04-30       Impact factor: 3.575

4.  Some yeast mitochondrial RNAs are circular.

Authors:  A C Arnberg; G J Van Ommen; L A Grivell; E F Van Bruggen; P Borst
Journal:  Cell       Date:  1980-02       Impact factor: 41.582

5.  A circularized sodium-calcium exchanger exon 2 transcript.

Authors:  X F Li; J Lytton
Journal:  J Biol Chem       Date:  1999-03-19       Impact factor: 5.157

6.  The mouse formin (Fmn) gene: abundant circular RNA transcripts and gene-targeted deletion analysis.

Authors:  C W Chao; D C Chan; A Kuo; P Leder
Journal:  Mol Med       Date:  1998-09       Impact factor: 6.354

7.  Formation of triple-helical structures by the 3'-end sequences of MALAT1 and MENβ noncoding RNAs.

Authors:  Jessica A Brown; Max L Valenstein; Therese A Yario; Kazimierz T Tycowski; Joan A Steitz
Journal:  Proc Natl Acad Sci U S A       Date:  2012-11-05       Impact factor: 11.205

8.  Natural trans-splicing in carnitine octanoyltransferase pre-mRNAs in rat liver.

Authors:  C Caudevilla; D Serra; A Miliar; C Codony; G Asins; M Bach; F G Hegardt
Journal:  Proc Natl Acad Sci U S A       Date:  1998-10-13       Impact factor: 11.205

9.  Circular intronic long noncoding RNAs.

Authors:  Yang Zhang; Xiao-Ou Zhang; Tian Chen; Jian-Feng Xiang; Qing-Fei Yin; Yu-Hang Xing; Shanshan Zhu; Li Yang; Ling-Ling Chen
Journal:  Mol Cell       Date:  2013-09-12       Impact factor: 17.970

10.  Transcriptome-wide discovery of circular RNAs in Archaea.

Authors:  Miri Danan; Schraga Schwartz; Sarit Edelheit; Rotem Sorek
Journal:  Nucleic Acids Res       Date:  2011-12-02       Impact factor: 16.971

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  898 in total

1.  Investigation of circular RNAs in an ectoparasitic mite Varroa destructor (Acarina: Varroidae) of the honey bee.

Authors:  Zheguang Lin; Hao Xu; Xiaoling Su; Yalu Ke; Wei Wang; Yujiao Li; Mingliang Zhuang; Heng Chen; Yibing Liu; Kang Wang; Guohong Chen; Ting Ji
Journal:  Parasitol Res       Date:  2021-01-16       Impact factor: 2.289

2.  Research progress on circularRNAs in pancreatic cancer: emerging but promising.

Authors:  Yi-Zhi Wang; Yang An; Bing-Qi Li; Jun Lu; Jun-Chao Guo
Journal:  Cancer Biol Ther       Date:  2019-05-28       Impact factor: 4.742

3.  Circular RNA of the human sphingomyelin synthase 1 gene: Multiple splice variants, evolutionary conservatism and expression in different tissues.

Authors:  Ivan B Filippenkov; Olga Yu Sudarkina; Svetlana A Limborska; Lyudmila V Dergunova
Journal:  RNA Biol       Date:  2015       Impact factor: 4.652

4.  Construction and analysis of circular RNA molecular regulatory networks in liver cancer.

Authors:  Shuangchun Ren; Zhuoyuan Xin; Yinyan Xu; Jianting Xu; Guoqing Wang
Journal:  Cell Cycle       Date:  2017-11-03       Impact factor: 4.534

Review 5.  Circular RNAs and hereditary bone diseases.

Authors:  Naixiang Zhai; Yanqin Lu; Yanzhou Wang; Xiuzhi Ren; Jinxiang Han
Journal:  Intractable Rare Dis Res       Date:  2018-02

6.  Silencing CDR1as inhibits colorectal cancer progression through regulating microRNA-7.

Authors:  Wentao Tang; Meiling Ji; Guodong He; Liangliang Yang; Zhengchuan Niu; Mi Jian; Ye Wei; Li Ren; Jianmin Xu
Journal:  Onco Targets Ther       Date:  2017-04-07       Impact factor: 4.147

7.  Circular RNA circ_0000043 promotes endometrial carcinoma progression by regulating miR-1271-5p/CTNND1 axis.

Authors:  Dexian Wei; Meirong Tian; Weibo Fan; Xiaojing Zhong; Shuhong Wang; Yahang Chen; Shihong Zhang
Journal:  Arch Gynecol Obstet       Date:  2020-10-31       Impact factor: 2.344

Review 8.  Non-coding RNAs: the new central dogma of cancer biology.

Authors:  Phei Er Saw; Xiaoding Xu; Jianing Chen; Er-Wei Song
Journal:  Sci China Life Sci       Date:  2020-09-11       Impact factor: 6.038

Review 9.  Non-coding transcript variants of protein-coding genes - what are they good for?

Authors:  Sonam Dhamija; Manoj B Menon
Journal:  RNA Biol       Date:  2018-09-10       Impact factor: 4.652

10.  Discovery of Kaposi's sarcoma herpesvirus-encoded circular RNAs and a human antiviral circular RNA.

Authors:  Takanobu Tagawa; Shaojian Gao; Vishal N Koparde; Mileidy Gonzalez; John L Spouge; Anna P Serquiña; Kathryn Lurain; Ramya Ramaswami; Thomas S Uldrick; Robert Yarchoan; Joseph M Ziegelbauer
Journal:  Proc Natl Acad Sci U S A       Date:  2018-11-19       Impact factor: 11.205

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