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Literature DB >> 28402213

Engineering and expressing circular RNAs via tRNA splicing.

John J Noto^1,2, Casey A Schmidt^1,2, A Gregory Matera^1,2,3,4,5.

Abstract

Circular (circ)RNAs have recently become a subject of great biologic interest. It is now clear that they represent a diverse and abundant class of RNAs with regulated expression and evolutionarily conserved functions. There are several mechanisms by which RNA circularization can occur in vivo. Here, we focus on the biogenesis of tRNA intronic circular RNAs (tricRNAs) in archaea and animals, and we detail their use as research tools for orthogonal, directed circRNA expression in vivo.

Keywords: Back-splicing; RNA aptamers; circRNA; ectopic gene expression; tRNA processing; tricRNA

Mesh：

Substances：

Year: 2017 PMID： 28402213 PMCID： PMC5680671 DOI： 10.1080/15476286.2017.1317911

Source DB: PubMed Journal: RNA Biol ISSN： 1547-6286 Impact factor: 4.652

60 in total

1. Protein-coding introns from the 23S rRNA-encoding gene form stable circles in the hyperthermophilic archaeon Pyrobaculum organotrophum.

Authors: J Z Dalgaard; R A Garrett
Journal: Gene Date: 1992-11-02 Impact factor: 3.688

2. Coevolution of tRNA intron motifs and tRNA endonuclease architecture in Archaea.

Authors: Giuseppe D Tocchini-Valentini; Paolo Fruscoloni; Glauco P Tocchini-Valentini
Journal: Proc Natl Acad Sci U S A Date: 2005-10-12 Impact factor: 11.205

3. Circular RNAs in the Mammalian Brain Are Highly Abundant, Conserved, and Dynamically Expressed.

Authors: Agnieszka Rybak-Wolf; Christin Stottmeister; Petar Glažar; Marvin Jens; Natalia Pino; Sebastian Giusti; Mor Hanan; Mikaela Behm; Osnat Bartok; Reut Ashwal-Fluss; Margareta Herzog; Luisa Schreyer; Panagiotis Papavasileiou; Andranik Ivanov; Marie Öhman; Damian Refojo; Sebastian Kadener; Nikolaus Rajewsky
Journal: Mol Cell Date: 2015-04-23 Impact factor: 17.970

4. tRNA ligase is required for regulated mRNA splicing in the unfolded protein response.

Authors: C Sidrauski; J S Cox; P Walter
Journal: Cell Date: 1996-11-01 Impact factor: 41.582

5. HSPC117 is the essential subunit of a human tRNA splicing ligase complex.

Authors: Johannes Popow; Markus Englert; Stefan Weitzer; Alexander Schleiffer; Beata Mierzwa; Karl Mechtler; Simon Trowitzsch; Cindy L Will; Reinhard Lührmann; Dieter Söll; Javier Martinez
Journal: Science Date: 2011-02-11 Impact factor: 47.728

6. Detecting and characterizing circular RNAs.

Authors: William R Jeck; Norman E Sharpless
Journal: Nat Biotechnol Date: 2014-05 Impact factor: 54.908

7. Substrate recognition and identification of splice sites by the tRNA-splicing endonuclease and ligase from Saccharomyces cerevisiae.

Authors: C L Greer; D Söll; I Willis
Journal: Mol Cell Biol Date: 1987-01 Impact factor: 4.272

8. Transcriptome-wide discovery of circular RNAs in Archaea.

Authors: Miri Danan; Schraga Schwartz; Sarit Edelheit; Rotem Sorek
Journal: Nucleic Acids Res Date: 2011-12-02 Impact factor: 16.971

9. Plant tRNA ligases are multifunctional enzymes that have diverged in sequence and substrate specificity from RNA ligases of other phylogenetic origins.

Authors: Markus Englert; Hildburg Beier
Journal: Nucleic Acids Res Date: 2005-01-14 Impact factor: 16.971

10. Combinatorial control of Drosophila circular RNA expression by intronic repeats, hnRNPs, and SR proteins.

Authors: Marianne C Kramer; Dongming Liang; Deirdre C Tatomer; Beth Gold; Zachary M March; Sara Cherry; Jeremy E Wilusz
Journal: Genes Dev Date: 2015-10-08 Impact factor: 11.361

29 in total

1. Characterization and Cloning of Grape Circular RNAs Identified the Cold Resistance-Related Vv-circATS1.

Authors: Zhen Gao; Jing Li; Meng Luo; Hui Li; Qiuju Chen; Lei Wang; Shiren Song; Liping Zhao; Wenping Xu; Caixi Zhang; Shiping Wang; Chao Ma
Journal: Plant Physiol Date: 2019-04-08 Impact factor: 8.340

2. Research progress on circularRNAs in pancreatic cancer: emerging but promising.

Authors: Yi-Zhi Wang; Yang An; Bing-Qi Li; Jun Lu; Jun-Chao Guo
Journal: Cancer Biol Ther Date: 2019-05-28 Impact factor: 4.742

3. Research progress of circular RNAs in lung cancer.

Authors: Yi Ma; Xin Zhang; Yi-Zhi Wang; Hao Tian; Shun Xu
Journal: Cancer Biol Ther Date: 2018-11-07 Impact factor: 4.742

Review 4. A 360° view of circular RNAs: From biogenesis to functions.

Authors: Jeremy E Wilusz
Journal: Wiley Interdiscip Rev RNA Date: 2018-04-14 Impact factor: 9.957

Review 5. Tip of the iceberg: roles of circRNAs in hematological malignancies.

Authors: Shan-Shan Guo; Bi-Xia Li; Duo-Bing Zou; Shu-Jun Yang; Li-Xia Sheng; Gui-Fang Ouyang; Qi-Tian Mu; He Huang
Journal: Am J Cancer Res Date: 2020-02-01 Impact factor: 6.166

Review 6. The design and synthesis of circular RNAs.

Authors: Prisca Obi; Y Grace Chen
Journal: Methods Date: 2021-03-02 Impact factor: 3.608

Review 7. Circular RNAs in stem cell differentiation: a sponge-like role for miRNAs.

Authors: Jian Zhou; Cheng Qiu; Zhihua Fan; Tianyi Liu; Tang Liu
Journal: Int J Med Sci Date: 2021-04-22 Impact factor: 3.738

Review 8. Biological roles and potential clinical values of circular RNAs in gastrointestinal malignancies.

Authors: Xueping Tao; Yongfu Shao; Jianing Yan; Liyang Yang; Qihua Ye; Qingling Wang; Rongdan Lu; Junming Guo
Journal: Cancer Biol Med Date: 2021-03-12 Impact factor: 4.248

Review 9. Circular RNAs in Hepatocellular Carcinoma: Emerging Functions to Clinical Significances.

Authors: Yucheng Zhang; Yali Wang
Journal: Front Oncol Date: 2021-05-14 Impact factor: 6.244

Review 10. Recent Advances in the Potential Use of Circular RNA for the Diagnosis and Treatment of Pancreatic Cancer.

Authors: Xinzhu Sun; Dongyan Liu; Nan Ge; Jintao Guo; Sheng Wang; Xiang Liu; Guoxin Wang; Siyu Sun
Journal: Cancer Manag Res Date: 2021-05-28 Impact factor: 3.989