Literature DB >> 28571108

Quinary interactions with an unfolded state ensemble.

Rachel D Cohen1, Gary J Pielak1,2,3,4.   

Abstract

Anfinsen's thermodynamic hypothesis states that the native three-dimensional fold of a protein represents the structure with the lowest Gibbs free energy. Changes in the free energy of denaturation can arise from changes to the folded state, the unfolded state, or both. It has been recently recognized that quinary interactions, transient contacts that take place only in cells, can modulate protein stability through interactions involving the folded state. Here we show that the cellular environment can also remodel the unfolded state ensemble.
© 2017 The Protein Society.

Keywords:  NMR; amide proton exchange; folding; quinary structure; stability; thermodynamics; unfolded ensemble

Mesh:

Substances:

Year:  2017        PMID: 28571108      PMCID: PMC5563149          DOI: 10.1002/pro.3206

Source DB:  PubMed          Journal:  Protein Sci        ISSN: 0961-8368            Impact factor:   6.725


  51 in total

1.  The proteasome antechamber maintains substrates in an unfolded state.

Authors:  Amy M Ruschak; Tomasz L Religa; Sarah Breuer; Susanne Witt; Lewis E Kay
Journal:  Nature       Date:  2010-10-14       Impact factor: 49.962

2.  Thermodynamics of protein destabilization in live cells.

Authors:  Jens Danielsson; Xin Mu; Lisa Lang; Huabing Wang; Andres Binolfi; François-Xavier Theillet; Beata Bekei; Derek T Logan; Philipp Selenko; Håkan Wennerström; Mikael Oliveberg
Journal:  Proc Natl Acad Sci U S A       Date:  2015-09-21       Impact factor: 11.205

3.  Protein stability and folding kinetics in the nucleus and endoplasmic reticulum of eucaryotic cells.

Authors:  A Dhar; K Girdhar; D Singh; H Gelman; S Ebbinghaus; M Gruebele
Journal:  Biophys J       Date:  2011-07-20       Impact factor: 4.033

4.  Role of a nonnative interaction in the folding of the protein G B1 domain as inferred from the conformational analysis of the alpha-helix fragment.

Authors:  F J Blanco; A R Ortiz; L Serrano
Journal:  Fold Des       Date:  1997

5.  Quinary structure modulates protein stability in cells.

Authors:  William B Monteith; Rachel D Cohen; Austin E Smith; Emilio Guzman-Cisneros; Gary J Pielak
Journal:  Proc Natl Acad Sci U S A       Date:  2015-01-26       Impact factor: 11.205

6.  Reverse hydrophobic effects relieved by amino-acid substitutions at a protein surface.

Authors:  A A Pakula; R T Sauer
Journal:  Nature       Date:  1990-03-22       Impact factor: 49.962

7.  Exploring weak, transient protein--protein interactions in crowded in vivo environments by in-cell nuclear magnetic resonance spectroscopy.

Authors:  Qinghua Wang; Anastasia Zhuravleva; Lila M Gierasch
Journal:  Biochemistry       Date:  2011-10-05       Impact factor: 3.162

8.  Residue level quantification of protein stability in living cells.

Authors:  William B Monteith; Gary J Pielak
Journal:  Proc Natl Acad Sci U S A       Date:  2014-07-21       Impact factor: 11.205

9.  Molecular evolution, intracellular organization, and the quinary structure of proteins.

Authors:  E H McConkey
Journal:  Proc Natl Acad Sci U S A       Date:  1982-05       Impact factor: 11.205

10.  Reduced native state stability in crowded cellular environment due to protein-protein interactions.

Authors:  Ryuhei Harada; Naoya Tochio; Takanori Kigawa; Yuji Sugita; Michael Feig
Journal:  J Am Chem Soc       Date:  2013-02-20       Impact factor: 15.419

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  5 in total

1.  Surface Charge Modulates Protein-Protein Interactions in Physiologically Relevant Environments.

Authors:  Alex J Guseman; Shannon L Speer; Gerardo M Perez Goncalves; Gary J Pielak
Journal:  Biochemistry       Date:  2018-03-06       Impact factor: 3.162

2.  Surface Attachment Enhances the Thermodynamic Stability of Protein L.

Authors:  Gabriel Ortega; Martin Kurnik; Philippe Dauphin-Ducharme; Hui Li; Netzahualcóyotl Arroyo-Currás; Amanda Caceres; Kevin W Plaxco
Journal:  Angew Chem Int Ed Engl       Date:  2019-01-15       Impact factor: 15.336

3.  Crowding-induced protein destabilization in the absence of soft attractions.

Authors:  Saman Bazmi; Stefan Wallin
Journal:  Biophys J       Date:  2022-06-07       Impact factor: 3.699

4.  Osmolytes and crowders regulate aggregation of the cancer-related L106R mutant of the Axin protein.

Authors:  Tommaso Garfagnini; Yael Levi-Kalisman; Daniel Harries; Assaf Friedler
Journal:  Biophys J       Date:  2021-06-02       Impact factor: 3.699

Review 5.  Radio Signals from Live Cells: The Coming of Age of In-Cell Solution NMR.

Authors:  Enrico Luchinat; Matteo Cremonini; Lucia Banci
Journal:  Chem Rev       Date:  2022-01-21       Impact factor: 72.087

  5 in total

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