Literature DB >> 28971539

Large cosolutes, small cosolutes, and dihydrofolate reductase activity.

Luis C Acosta1, Gerardo M Perez Goncalves1, Gary J Pielak1,2,3,4, Annelise H Gorensek-Benitez1.   

Abstract

Protein enzymes are the main catalysts in the crowded and complex cellular interior, but their activity is almost always studied in dilute buffered solutions. Studies that attempt to recreate the cellular interior in vitro often utilize synthetic polymers as crowding agents. Here, we report the effects of the synthetic polymer cosolutes Ficoll, dextran, and polyvinylpyrrolidone, and their respective monomers, sucrose, glucose, and 1-ethyl-2-pyrrolidone, on the activity of the 18-kDa monomeric enzyme, Escherichia coli dihydrofolate reductase. At low concentrations, reductase activity increases relative to buffer and monomers, suggesting a macromolecular effect. However, the effect decreases at higher concentrations, approaching, and, in some cases, falling below buffer values. We also assessed activity in terms of volume occupancy, viscosity, and the overlap concentration (where polymers form an interwoven mesh). The trends vary with polymer family, but changes in activity are within threefold of buffer values. We also compiled and analyzed results from previous studies and conclude that alterations of steady-state enzyme kinetics in solutions crowded with synthetic polymers are idiosyncratic with respect to the crowding agent and enzyme.
© 2017 The Protein Society.

Entities:  

Keywords:  concentration-dependent crowding; crowding and enzyme activity; enzyme kinetics; macromolecular crowding; size-dependent crowding

Mesh:

Substances:

Year:  2017        PMID: 28971539      PMCID: PMC5699487          DOI: 10.1002/pro.3316

Source DB:  PubMed          Journal:  Protein Sci        ISSN: 0961-8368            Impact factor:   6.725


  70 in total

1.  Nucleic acid and protein mass mapping by live-cell deep-ultraviolet microscopy.

Authors:  Benjamin J Zeskind; Caroline D Jordan; Winston Timp; Linda Trapani; Guichy Waller; Victor Horodincu; Daniel J Ehrlich; Paul Matsudaira
Journal:  Nat Methods       Date:  2007-06-03       Impact factor: 28.547

2.  In search of dihydrofolate reductase.

Authors:  F M Huennekens
Journal:  Protein Sci       Date:  1996-06       Impact factor: 6.725

3.  Quinary structure modulates protein stability in cells.

Authors:  William B Monteith; Rachel D Cohen; Austin E Smith; Emilio Guzman-Cisneros; Gary J Pielak
Journal:  Proc Natl Acad Sci U S A       Date:  2015-01-26       Impact factor: 11.205

4.  Unexpected effects of macromolecular crowding on protein stability.

Authors:  Laura A Benton; Austin E Smith; Gregory B Young; Gary J Pielak
Journal:  Biochemistry       Date:  2012-11-27       Impact factor: 3.162

5.  Exploring weak, transient protein--protein interactions in crowded in vivo environments by in-cell nuclear magnetic resonance spectroscopy.

Authors:  Qinghua Wang; Anastasia Zhuravleva; Lila M Gierasch
Journal:  Biochemistry       Date:  2011-10-05       Impact factor: 3.162

6.  Enzyme reactions in polymer media.

Authors:  T C Laurent
Journal:  Eur J Biochem       Date:  1971-08-25

7.  Macromolecular crowding and the steady-state kinetics of malate dehydrogenase.

Authors:  Christopher G Poggi; Kristin M Slade
Journal:  Biochemistry       Date:  2014-12-19       Impact factor: 3.162

8.  Effect of crowding by dextrans and Ficolls on the rate of alkaline phosphatase-catalyzed hydrolysis: a size-dependent investigation.

Authors:  L Homchaudhuri; Navanita Sarma; Rajaram Swaminathan
Journal:  Biopolymers       Date:  2006-12-05       Impact factor: 2.505

Review 9.  Ficoll and dextran vs. globular proteins as probes for testing glomerular permselectivity: effects of molecular size, shape, charge, and deformability.

Authors:  Daniele Venturoli; Bengt Rippe
Journal:  Am J Physiol Renal Physiol       Date:  2005-04

10.  Molecular crowding enhanced ATPase activity of the RNA helicase eIF4A correlates with compaction of its quaternary structure and association with eIF4G.

Authors:  Sabine R Akabayov; Barak Akabayov; Charles C Richardson; Gerhard Wagner
Journal:  J Am Chem Soc       Date:  2013-06-27       Impact factor: 15.419

View more
  7 in total

1.  Protein shape modulates crowding effects.

Authors:  Alex J Guseman; Gerardo M Perez Goncalves; Shannon L Speer; Gregory B Young; Gary J Pielak
Journal:  Proc Natl Acad Sci U S A       Date:  2018-10-09       Impact factor: 11.205

2.  An in vitro mimic of in-cell solvation for protein folding studies.

Authors:  Caitlin M Davis; Jonathan Deutsch; Martin Gruebele
Journal:  Protein Sci       Date:  2020-02-06       Impact factor: 6.725

3.  Crowders Steal Dihydrofolate Reductase Ligands through Quinary Interactions.

Authors:  Michael R Duff; Nidhi Desai; Michael A Craig; Pratul K Agarwal; Elizabeth E Howell
Journal:  Biochemistry       Date:  2019-02-18       Impact factor: 3.162

4.  In Vivo Titration of Folate Pathway Enzymes.

Authors:  Deepika Nambiar; Timkhite-Kulu Berhane; Robert Shew; Bryan Schwarz; Michael R Duff; Elizabeth E Howell
Journal:  Appl Environ Microbiol       Date:  2018-09-17       Impact factor: 4.792

5.  Macromolecular crowding effects on the kinetics of opposing reactions catalyzed by alcohol dehydrogenase.

Authors:  Xander E Wilcox; Charmaine B Chung; Kristin M Slade
Journal:  Biochem Biophys Rep       Date:  2021-02-20

Review 6.  Protein Fibrillation under Crowded Conditions.

Authors:  Annelise H Gorensek-Benitez; Bryan Kirk; Jeffrey K Myers
Journal:  Biomolecules       Date:  2022-07-06

7.  Glucose Oxidase Immobilized on Magnetic Zirconia: Controlling Catalytic Performance and Stability.

Authors:  Angela K Haskell; Aleksandrina M Sulman; Ekaterina P Golikova; Barry D Stein; Maren Pink; David Gene Morgan; Natalya V Lakina; Alexey Yu Karpenkov; Olga P Tkachenko; Esther M Sulman; Valentina G Matveeva; Lyudmila M Bronstein
Journal:  ACS Omega       Date:  2020-05-20
  7 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.