Literature DB >> 27922609

The molecular basis of metabolic cycles and their relationship to circadian rhythms.

Jane Mellor1.   

Abstract

Metabolic cycles result from the partitioning of oxidative and reductive metabolism into rhythmic phases of gene expression and oscillating post-translational protein modifications. Relatively little is known about how these switches in gene expression are controlled, although recent studies have suggested that transcription itself may play a central role. This review explores the molecular basis of the metabolic and gene-expression oscillations in the yeast Saccharomyces cerevisiae, as well as how they relate to other biological time-keeping mechanisms, such as circadian rhythms.

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Year:  2016        PMID: 27922609     DOI: 10.1038/nsmb.3311

Source DB:  PubMed          Journal:  Nat Struct Mol Biol        ISSN: 1545-9985            Impact factor:   15.369


  110 in total

1.  Cyclic AMP mediates the cell cycle dynamics of energy metabolism in Saccharomyces cerevisiae.

Authors:  Dirk Müller; Simone Exler; Luciano Aguilera-Vázquez; Ester Guerrero-Martín; Matthias Reuss
Journal:  Yeast       Date:  2003-03       Impact factor: 3.239

2.  Cotranscriptional set2 methylation of histone H3 lysine 36 recruits a repressive Rpd3 complex.

Authors:  Michael-Christopher Keogh; Siavash K Kurdistani; Stephanie A Morris; Seong Hoon Ahn; Vladimir Podolny; Sean R Collins; Maya Schuldiner; Kayu Chin; Thanuja Punna; Natalie J Thompson; Charles Boone; Andrew Emili; Jonathan S Weissman; Timothy R Hughes; Brian D Strahl; Michael Grunstein; Jack F Greenblatt; Stephen Buratowski; Nevan J Krogan
Journal:  Cell       Date:  2005-11-18       Impact factor: 41.582

Review 3.  Ultradian metronome: timekeeper for orchestration of cellular coherence.

Authors:  David Lloyd; Douglas B Murray
Journal:  Trends Biochem Sci       Date:  2005-07       Impact factor: 13.807

4.  Nucleosome positions predicted through comparative genomics.

Authors:  Ilya P Ioshikhes; Istvan Albert; Sara J Zanton; B Franklin Pugh
Journal:  Nat Genet       Date:  2006-09-10       Impact factor: 38.330

5.  Nascent-seq indicates widespread cotranscriptional RNA editing in Drosophila.

Authors:  Joseph Rodriguez; Jerome S Menet; Michael Rosbash
Journal:  Mol Cell       Date:  2012-05-31       Impact factor: 17.970

6.  Circadian rhythm of hyperoxidized peroxiredoxin II is determined by hemoglobin autoxidation and the 20S proteasome in red blood cells.

Authors:  Chun-Seok Cho; Hyun Ju Yoon; Jeong Yeon Kim; Hyun Ae Woo; Sue Goo Rhee
Journal:  Proc Natl Acad Sci U S A       Date:  2014-08-04       Impact factor: 11.205

Review 7.  A conserved DNA damage response pathway responsible for coupling the cell division cycle to the circadian and metabolic cycles.

Authors:  Zheng Chen; Steven L McKnight
Journal:  Cell Cycle       Date:  2007-10-08       Impact factor: 4.534

8.  The exosome regulates circadian gene expression in a posttranscriptional negative feedback loop.

Authors:  Jinhu Guo; Ping Cheng; Haiyan Yuan; Yi Liu
Journal:  Cell       Date:  2009-09-10       Impact factor: 41.582

9.  Gcn5 and sirtuins regulate acetylation of the ribosomal protein transcription factor Ifh1.

Authors:  Michael Downey; Britta Knight; Ajay A Vashisht; Charles A Seller; James A Wohlschlegel; David Shore; David P Toczyski
Journal:  Curr Biol       Date:  2013-08-22       Impact factor: 10.834

10.  Regulation of the yeast metabolic cycle by transcription factors with periodic activities.

Authors:  Aliz R Rao; Matteo Pellegrini
Journal:  BMC Syst Biol       Date:  2011-10-12
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  16 in total

Review 1.  Magnetocarcinogenesis: is there a mechanism for carcinogenic effects of weak magnetic fields?

Authors:  Jukka Juutilainen; Mikko Herrala; Jukka Luukkonen; Jonne Naarala; P J Hore
Journal:  Proc Biol Sci       Date:  2018-05-30       Impact factor: 5.349

2.  Recognition of Histone Crotonylation by Taf14 Links Metabolic State to Gene Expression.

Authors:  Graeme J Gowans; Joseph B Bridgers; Jibo Zhang; Raghuvar Dronamraju; Anthony Burnetti; Devin A King; Aline V Thiengmany; Stephen A Shinsky; Natarajan V Bhanu; Benjamin A Garcia; Nicolas E Buchler; Brian D Strahl; Ashby J Morrison
Journal:  Mol Cell       Date:  2019-10-29       Impact factor: 17.970

3.  Iron Sulfur and Molybdenum Cofactor Enzymes Regulate the Drosophila Life Cycle by Controlling Cell Metabolism.

Authors:  Zvonimir Marelja; Silke Leimkühler; Fanis Missirlis
Journal:  Front Physiol       Date:  2018-02-14       Impact factor: 4.566

Review 4.  Circadian Clock, Cell Division, and Cancer: From Molecules to Organism.

Authors:  Anton Shostak
Journal:  Int J Mol Sci       Date:  2017-04-20       Impact factor: 5.923

5.  Eukaryotic cell biology is temporally coordinated to support the energetic demands of protein homeostasis.

Authors:  John S O'Neill; Nathaniel P Hoyle; J Brian Robertson; Rachel S Edgar; Andrew D Beale; Sew Y Peak-Chew; Jason Day; Ana S H Costa; Christian Frezza; Helen C Causton
Journal:  Nat Commun       Date:  2020-09-17       Impact factor: 14.919

6.  Flavin-based metabolic cycles are integral features of growth and division in single yeast cells.

Authors:  Bridget L Baumgartner; Richard O'Laughlin; Meng Jin; Lev S Tsimring; Nan Hao; Jeff Hasty
Journal:  Sci Rep       Date:  2018-12-21       Impact factor: 4.379

Review 7.  Electromagnetic Fields, Genomic Instability and Cancer: A Systems Biological View.

Authors:  Jonne Naarala; Mikko Kolehmainen; Jukka Juutilainen
Journal:  Genes (Basel)       Date:  2019-06-25       Impact factor: 4.096

Review 8.  Circadian and Sleep Metabolomics Across Species.

Authors:  Dania M Malik; Georgios K Paschos; Amita Sehgal; Aalim M Weljie
Journal:  J Mol Biol       Date:  2020-05-03       Impact factor: 5.469

Review 9.  Quantitative Studies for Cell-Division Cycle Control.

Authors:  Yukinobu Arata; Hiroaki Takagi
Journal:  Front Physiol       Date:  2019-08-19       Impact factor: 4.566

10.  A minimal "push-pull" bistability model explains oscillations between quiescent and proliferative cell states.

Authors:  Sandeep Krishna; Sunil Laxman
Journal:  Mol Biol Cell       Date:  2018-07-25       Impact factor: 4.138

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