Literature DB >> 15935677

Ultradian metronome: timekeeper for orchestration of cellular coherence.

David Lloyd1, Douglas B Murray.   

Abstract

Dynamic intracellular spatial and temporal organization emerges from spontaneous synchronization of a massive array of weakly coupled oscillators; the majority of subcellular processes are implicated in this integrated expression of cellular physiology. Evidence for this view comes mainly from studies of Saccharomyces cerevisiae growing in self-synchronized continuous cultures, in which a temperature-compensated ultradian clock (period of approximately 40 min) couples fermentation with redox state in addition to the transcriptome and cell-division-cycle progression. Functions for ultradian clocks have also been determined in other yeasts (e.g. Schizosaccharomyces pombe and Candida utilis), seven protists (e.g. Acanthamoeba castellanii and Paramecium tetraurelia), as well as cultured mammalian cells. We suggest that ultradian timekeeping is a basic universal necessity for coordinated intracellular coherence.

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Year:  2005        PMID: 15935677     DOI: 10.1016/j.tibs.2005.05.005

Source DB:  PubMed          Journal:  Trends Biochem Sci        ISSN: 0968-0004            Impact factor:   13.807


  24 in total

Review 1.  What yeast and cardiomyocytes share: ultradian oscillatory redox mechanisms of cellular coherence and survival.

Authors:  David Lloyd; Sonia Cortassa; Brian O'Rourke; Miguel A Aon
Journal:  Integr Biol (Camb)       Date:  2011-12-05       Impact factor: 2.192

2.  Regulation of yeast oscillatory dynamics.

Authors:  Douglas B Murray; Manfred Beckmann; Hiroaki Kitano
Journal:  Proc Natl Acad Sci U S A       Date:  2007-02-06       Impact factor: 11.205

3.  Biological time is fractal: early events reverberate over a life time.

Authors:  David Lloyd
Journal:  J Biosci       Date:  2008-03       Impact factor: 1.826

Review 4.  The molecular basis of metabolic cycles and their relationship to circadian rhythms.

Authors:  Jane Mellor
Journal:  Nat Struct Mol Biol       Date:  2016-12-06       Impact factor: 15.369

5.  The timing is right.

Authors:  R Magnus N Friis; Michael C Schultz
Journal:  Nat Struct Mol Biol       Date:  2014-10       Impact factor: 15.369

Review 6.  Systems approaches for the study of metabolic cycles in yeast.

Authors:  Sunil Laxman; Benjamin P Tu
Journal:  Curr Opin Genet Dev       Date:  2010-11-02       Impact factor: 5.578

7.  Yeast Arf3p modulates plasma membrane PtdIns(4,5)P2 levels to facilitate endocytosis.

Authors:  Iwona I Smaczynska-de Rooij; Rosaria Costa; Kathryn R Ayscough
Journal:  Traffic       Date:  2008-01-15       Impact factor: 6.215

Review 8.  Quantitative analysis of cellular metabolic dissipative, self-organized structures.

Authors:  Ildefonso Martínez de la Fuente
Journal:  Int J Mol Sci       Date:  2010-09-27       Impact factor: 5.923

9.  Cycling Transcriptional Networks Optimize Energy Utilization on a Genome Scale.

Authors:  Guang-Zhong Wang; Stephanie L Hickey; Lei Shi; Hung-Chung Huang; Prachi Nakashe; Nobuya Koike; Benjamin P Tu; Joseph S Takahashi; Genevieve Konopka
Journal:  Cell Rep       Date:  2015-11-19       Impact factor: 9.423

Review 10.  Self-Organization and Information Processing: From Basic Enzymatic Activities to Complex Adaptive Cellular Behavior.

Authors:  Ildefonso M De la Fuente; Luis Martínez; Jose Carrasco-Pujante; Maria Fedetz; José I López; Iker Malaina
Journal:  Front Genet       Date:  2021-05-21       Impact factor: 4.599

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