Literature DB >> 32376454

Circadian and Sleep Metabolomics Across Species.

Dania M Malik1, Georgios K Paschos2, Amita Sehgal3, Aalim M Weljie4.   

Abstract

Under normal circadian function, metabolic control is temporally coordinated across tissues and behaviors with a 24-h period. However, circadian disruption results in negative consequences for metabolic homeostasis including energy or redox imbalances. Yet, circadian disruption has become increasingly prevalent within today's society due to many factors including sleep loss. Metabolic consequences of both have been revealed by metabolomics analyses of circadian biology and sleep. Specifically, two primary analytical platforms, mass spectrometry and nuclear magnetic resonance spectroscopy, have been used to study molecular clock and sleep influences on overall metabolic rhythmicity. For example, human studies have demonstrated the prevalence of metabolic rhythms in human biology, as well as pan-metabolome consequences of sleep disruption. However, human studies are limited to peripheral metabolic readouts primarily through minimally invasive procedures. For further tissue- and organism-specific investigations, a number of model systems have been studied, based upon the conserved nature of both the molecular clock and sleep across species. Here we summarize human studies as well as key findings from metabolomics studies using mice, Drosophila, and zebrafish. While informative, a limitation in existing literature is a lack of interpretation regarding dynamic synthesis or catabolism within metabolite pools. To this extent, future work incorporating isotope tracers, specific metabolite reporters, and single-cell metabolomics may provide a means of exploring dynamic activity in pathways of interest.
Copyright © 2020 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  LC-MS; NMR; chronometabolomics; circadian clocks; diurnal rhythms

Mesh:

Year:  2020        PMID: 32376454      PMCID: PMC7781158          DOI: 10.1016/j.jmb.2020.04.027

Source DB:  PubMed          Journal:  J Mol Biol        ISSN: 0022-2836            Impact factor:   5.469


  252 in total

Review 1.  Circadian rhythms, sleep, and metabolism.

Authors:  Wenyu Huang; Kathryn Moynihan Ramsey; Biliana Marcheva; Joseph Bass
Journal:  J Clin Invest       Date:  2011-06-01       Impact factor: 14.808

2.  Characterization of a subset of the basic-helix-loop-helix-PAS superfamily that interacts with components of the dioxin signaling pathway.

Authors:  J B Hogenesch; W K Chan; V H Jackiw; R C Brown; Y Z Gu; M Pray-Grant; G H Perdew; C A Bradfield
Journal:  J Biol Chem       Date:  1997-03-28       Impact factor: 5.157

Review 3.  Cell lines.

Authors:  Lucy Cherbas; Lei Gong
Journal:  Methods       Date:  2014-01-13       Impact factor: 3.608

4.  Correction of 13C mass isotopomer distributions for natural stable isotope abundance.

Authors:  C A Fernandez; C Des Rosiers; S F Previs; F David; H Brunengraber
Journal:  J Mass Spectrom       Date:  1996-03       Impact factor: 1.982

Review 5.  Circadian System and Glucose Metabolism: Implications for Physiology and Disease.

Authors:  Jingyi Qian; Frank A J L Scheer
Journal:  Trends Endocrinol Metab       Date:  2016-04-11       Impact factor: 12.015

6.  Evidence for widespread dysregulation of circadian clock progression in human cancer.

Authors:  Jarrod Shilts; Guanhua Chen; Jacob J Hughey
Journal:  PeerJ       Date:  2018-01-31       Impact factor: 2.984

7.  High throughput reaction screening using desorption electrospray ionization mass spectrometry.

Authors:  Michael Wleklinski; Bradley P Loren; Christina R Ferreira; Zinia Jaman; Larisa Avramova; Tiago J P Sobreira; David H Thompson; R Graham Cooks
Journal:  Chem Sci       Date:  2018-01-04       Impact factor: 9.825

Review 8.  Guidelines and considerations for the use of system suitability and quality control samples in mass spectrometry assays applied in untargeted clinical metabolomic studies.

Authors:  David Broadhurst; Royston Goodacre; Stacey N Reinke; Julia Kuligowski; Ian D Wilson; Matthew R Lewis; Warwick B Dunn
Journal:  Metabolomics       Date:  2018-05-18       Impact factor: 4.290

9.  Circadian and wake-dependent changes in human plasma polar metabolites during prolonged wakefulness: A preliminary analysis.

Authors:  Leilah K Grant; Suzanne Ftouni; Brunda Nijagal; David P De Souza; Dedreia Tull; Malcolm J McConville; Shantha M W Rajaratnam; Steven W Lockley; Clare Anderson
Journal:  Sci Rep       Date:  2019-03-14       Impact factor: 4.379

10.  A Pilot Characterization of the Human Chronobiome.

Authors:  Carsten Skarke; Nicholas F Lahens; Seth D Rhoades; Amy Campbell; Kyle Bittinger; Aubrey Bailey; Christian Hoffmann; Randal S Olson; Lihong Chen; Guangrui Yang; Thomas S Price; Jason H Moore; Frederic D Bushman; Casey S Greene; Gregory R Grant; Aalim M Weljie; Garret A FitzGerald
Journal:  Sci Rep       Date:  2017-12-07       Impact factor: 4.379

View more
  10 in total

Review 1.  Circadian Rhythms, Disease and Chronotherapy.

Authors:  Yool Lee; Jeffrey M Field; Amita Sehgal
Journal:  J Biol Rhythms       Date:  2021-09-22       Impact factor: 3.649

2.  Untargeted and Targeted Circadian Metabolomics Using Liquid Chromatography-Tandem Mass Spectrometry (LC-MS/MS) and Flow Injection-Electrospray Ionization-Tandem Mass Spectrometry (FIA-ESI-MS/MS).

Authors:  Anna Artati; Cornelia Prehn; Dominik Lutter; Kenneth Allen Dyar
Journal:  Methods Mol Biol       Date:  2022

Review 3.  Mild-to-Moderate Traumatic Brain Injury: A Review with Focus on the Visual System.

Authors:  Steven H Rauchman; Jacqueline Albert; Aaron Pinkhasov; Allison B Reiss
Journal:  Neurol Int       Date:  2022-05-30

Review 4.  Cross-species physiological interactions of endocrine disrupting chemicals with the circadian clock.

Authors:  Lisa N Bottalico; Aalim M Weljie
Journal:  Gen Comp Endocrinol       Date:  2020-11-07       Impact factor: 2.822

Review 5.  Harnessing Metabolomics to Advance Epilepsy Research.

Authors:  Tore Eid
Journal:  Epilepsy Curr       Date:  2022-02-17       Impact factor: 7.500

Review 6.  Metabolomics in Sleep, Insomnia and Sleep Apnea.

Authors:  Elke Humer; Christoph Pieh; Georg Brandmayr
Journal:  Int J Mol Sci       Date:  2020-09-30       Impact factor: 5.923

Review 7.  Multi-Modal Regulation of Circadian Physiology by Interactive Features of Biological Clocks.

Authors:  Yool Lee; Jonathan P Wisor
Journal:  Biology (Basel)       Date:  2021-12-24

8.  Regional Brain Analysis of Modified Amino Acids and Dipeptides during the Sleep/Wake Cycle.

Authors:  Theodosia Vallianatou; Nicholas B Bèchet; Mario S P Correia; Iben Lundgaard; Daniel Globisch
Journal:  Metabolites       Date:  2021-12-27

9.  Features of age-related response to sleep deprivation: in vivo experimental studies.

Authors:  Maria Novozhilova; Tatiana Mishchenko; Elena Kondakova; Tatiana Lavrova; Maria Gavrish; Svetlana Aferova; Claudio Franceschi; Maria Vedunova
Journal:  Aging (Albany NY)       Date:  2021-07-28       Impact factor: 5.682

10.  Differential regulation of oxidative stress, microbiota-derived, and energy metabolites in the mouse brain during sleep.

Authors:  Theodosia Vallianatou; Weifeng Lin; Nicholas B Bèchet; Mario Sp Correia; Nagesh C Shanbhag; Iben Lundgaard; Daniel Globisch
Journal:  J Cereb Blood Flow Metab       Date:  2021-07-22       Impact factor: 6.200

  10 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.