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Literature DB >> 27911789

Design principles for nonequilibrium self-assembly.

Michael Nguyen^1,2, Suriyanarayanan Vaikuntanathan^3,2.

Abstract

We consider an important class of self-assembly problems, and using the formalism of stochastic thermodynamics, we derive a set of design principles for growing controlled assemblies far from equilibrium. The design principles constrain the set of configurations that can be obtained under nonequilibrium conditions. Our central result provides intuition for how equilibrium self-assembly landscapes are modified under finite nonequilibrium drive.

Keywords: nonequilibrium self-assembly; pattern formation; second law of thermodynamics; self-assembly; stochastic thermodynamics

Year: 2016 PMID： 27911789 PMCID： PMC5167149 DOI： 10.1073/pnas.1609983113

Source DB: PubMed Journal: Proc Natl Acad Sci U S A ISSN： 0027-8424 Impact factor: 11.205

27 in total

Review 1. Getting RNA and protein in phase.

Authors: Stephanie C Weber; Clifford P Brangwynne
Journal: Cell Date: 2012-06-08 Impact factor: 41.582

Design principles for nonequilibrium self-assembly.

Review 1. Getting RNA and protein in phase.

2. Three faces of the second law. I. Master equation formulation.

3. Evidence for out-of-equilibrium crystal nucleation in suspensions of oppositely charged colloids.

4. Nonequilibirum assembly, retroviruses, and conical structures.

5. Mechanical control of bacterial cell shape.

6. Heterogeneity of functional groups in a metal-organic framework displays magic number ratios.

Review 7. Nanomaterials. Programmable materials and the nature of the DNA bond.

8. Self-assembly of multicomponent structures in and out of equilibrium.

9. Self-assembly at a nonequilibrium critical point.

10. Dissipation Bounds All Steady-State Current Fluctuations.

1. Mechanical and kinetic factors drive sorting of F-actin cross-linkers on bundles.

2. Entropic constraints on the steady-state fitness of competing self-replicators.

3. Topological localization in out-of-equilibrium dissipative systems.

4. Nonequilibrium correlations in minimal dynamical models of polymer copying.

5. A strong nonequilibrium bound for sorting of cross-linkers on growing biopolymers.

6. Equilibrium mechanisms of self-limiting assembly.

7. The importance of thermodynamics for molecular systems, and the importance of molecular systems for thermodynamics.

8. Thermodynamics of structure-forming systems.

9. Temperature protocols to guide selective self-assembly of competing structures.

10. Nonequilibrium associative retrieval of multiple stored self-assembly targets.