Literature DB >> 30553248

Entropic constraints on the steady-state fitness of competing self-replicators.

Owen Leddy1, Zhiyue Lu1, Aaron R Dinner1.   

Abstract

Recent developments in nonequilibrium statistical mechanics suggest that the history of entropy production in a system determines the relative likelihood of competing processes. This presents the possibility of interpreting and predicting the self-organization of complex active systems, but existing theories rely on quantities that are challenging to obtain. Here, we address this issue for a general class of Markovian systems in which two types of self-replicating molecular assemblies (self-replicators) compete for a pool of limiting resource molecules within a nonequilibrium steady state. We derive exact relations that show that the relative fitness of these species depends on a path function, ψ, which is a sum of the entropy production and a relative-entropy term. In the limit of infinite path length, ψ reduces to the entropy production. We demonstrate use of the theory by numerically studying two models inspired by biological systems, including a simplified model of a competition between strains of the yeast prion Sup35 in the presence of driven disaggregation by the ATPase Hsp104.

Entities:  

Year:  2018        PMID: 30553248      PMCID: PMC7789856          DOI: 10.1063/1.5048934

Source DB:  PubMed          Journal:  J Chem Phys        ISSN: 0021-9606            Impact factor:   3.488


  14 in total

1.  Origins and kinetic consequences of diversity in Sup35 yeast prion fibers.

Authors:  Angela H DePace; Jonathan S Weissman
Journal:  Nat Struct Biol       Date:  2002-05

2.  Statistical physics of self-replication.

Authors:  Jeremy L England
Journal:  J Chem Phys       Date:  2013-09-28       Impact factor: 3.488

3.  Interactions of the chaperone Hsp104 with yeast Sup35 and mammalian PrP.

Authors:  E C Schirmer; S Lindquist
Journal:  Proc Natl Acad Sci U S A       Date:  1997-12-09       Impact factor: 11.205

4.  Minimum energetic cost to maintain a target nonequilibrium state.

Authors:  Jordan M Horowitz; Kevin Zhou; Jeremy L England
Journal:  Phys Rev E       Date:  2017-04-04       Impact factor: 2.529

5.  Design principles for nonequilibrium self-assembly.

Authors:  Michael Nguyen; Suriyanarayanan Vaikuntanathan
Journal:  Proc Natl Acad Sci U S A       Date:  2016-11-22       Impact factor: 11.205

6.  Energetic costs of cellular computation.

Authors:  Pankaj Mehta; David J Schwab
Journal:  Proc Natl Acad Sci U S A       Date:  2012-10-08       Impact factor: 11.205

7.  Direct measurement of weakly nonequilibrium system entropy is consistent with Gibbs-Shannon form.

Authors:  Momčilo Gavrilov; Raphaël Chétrite; John Bechhoefer
Journal:  Proc Natl Acad Sci U S A       Date:  2017-10-03       Impact factor: 11.205

8.  Metabolic networks evolve towards states of maximum entropy production.

Authors:  Pornkamol Unrean; Friedrich Srienc
Journal:  Metab Eng       Date:  2011-09-01       Impact factor: 9.783

9.  Hsp104 drives "protein-only" positive selection of Sup35 prion strains encoding strong [PSI(+)].

Authors:  Morgan E DeSantis; James Shorter
Journal:  Chem Biol       Date:  2012-11-21

10.  Protein-only transmission of three yeast prion strains.

Authors:  Chih-Yen King; Ruben Diaz-Avalos
Journal:  Nature       Date:  2004-03-18       Impact factor: 49.962

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