Literature DB >> 34518221

A strong nonequilibrium bound for sorting of cross-linkers on growing biopolymers.

Yuqing Qiu1,2, Michael Nguyen1,2, Glen M Hocky3, Aaron R Dinner1,2, Suriyanarayanan Vaikuntanathan4,2.   

Abstract

Understanding the role of nonequilibrium driving in self-organization is crucial for developing a predictive description of biological systems, yet it is impeded by their complexity. The actin cytoskeleton serves as a paradigm for how equilibrium and nonequilibrium forces combine to give rise to self-organization. Motivated by recent experiments that show that actin filament growth rates can tune the morphology of a growing actin bundle cross-linked by two competing types of actin-binding proteins [S. L. Freedman et al., Proc. Natl. Acad. Sci. U.S.A. 116, 16192-16197 (2019)], we construct a minimal model for such a system and show that the dynamics of a growing actin bundle are subject to a set of thermodynamic constraints that relate its nonequilibrium driving, morphology, and molecular fluxes. The thermodynamic constraints reveal the importance of correlations between these molecular fluxes and offer a route to estimating microscopic driving forces from microscopy experiments.

Entities:  

Keywords:  actin bundling and growth; fluctuation–response relations; microscopic nonequilibrium driving; stochastic thermodynamics

Mesh:

Substances:

Year:  2021        PMID: 34518221      PMCID: PMC8463841          DOI: 10.1073/pnas.2102881118

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  37 in total

Review 1.  Models for actin polymerization motors.

Authors:  Richard B Dickinson
Journal:  J Math Biol       Date:  2008-07-09       Impact factor: 2.259

2.  Stochastic thermodynamics of single enzymes and molecular motors.

Authors:  U Seifert
Journal:  Eur Phys J E Soft Matter       Date:  2011-03-15       Impact factor: 1.890

3.  Dissipation Bounds All Steady-State Current Fluctuations.

Authors:  Todd R Gingrich; Jordan M Horowitz; Nikolay Perunov; Jeremy L England
Journal:  Phys Rev Lett       Date:  2016-03-21       Impact factor: 9.161

Review 4.  Mechanically tuning actin filaments to modulate the action of actin-binding proteins.

Authors:  Antoine Jégou; Guillaume Romet-Lemonne
Journal:  Curr Opin Cell Biol       Date:  2020-10-23       Impact factor: 8.382

5.  Robust oscillations in multi-cyclic Markov state models of biochemical clocks.

Authors:  Clara Del Junco; Suriyanarayanan Vaikuntanathan
Journal:  J Chem Phys       Date:  2020-02-07       Impact factor: 3.488

6.  High chemical affinity increases the robustness of biochemical oscillations.

Authors:  Clara Del Junco; Suriyanarayanan Vaikuntanathan
Journal:  Phys Rev E       Date:  2020-01       Impact factor: 2.529

7.  Kinetics and thermodynamics of first-order Markov chain copolymerization.

Authors:  P Gaspard; D Andrieux
Journal:  J Chem Phys       Date:  2014-07-28       Impact factor: 3.488

Review 8.  F-Actin Cytoskeleton Network Self-Organization Through Competition and Cooperation.

Authors:  Rachel S Kadzik; Kaitlin E Homa; David R Kovar
Journal:  Annu Rev Cell Dev Biol       Date:  2020-10-06       Impact factor: 13.827

9.  The free energy cost of accurate biochemical oscillations.

Authors:  Yuansheng Cao; Hongli Wang; Qi Ouyang; Yuhai Tu
Journal:  Nat Phys       Date:  2015-07-27       Impact factor: 20.034

10.  Actin crosslinker competition and sorting drive emergent GUV size-dependent actin network architecture.

Authors:  Yashar Bashirzadeh; Steven A Redford; Chatipat Lorpaiboon; Alessandro Groaz; Hossein Moghimianavval; Thomas Litschel; Petra Schwille; Glen M Hocky; Aaron R Dinner; Allen P Liu
Journal:  Commun Biol       Date:  2021-09-28
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  1 in total

1.  Actin crosslinker competition and sorting drive emergent GUV size-dependent actin network architecture.

Authors:  Yashar Bashirzadeh; Steven A Redford; Chatipat Lorpaiboon; Alessandro Groaz; Hossein Moghimianavval; Thomas Litschel; Petra Schwille; Glen M Hocky; Aaron R Dinner; Allen P Liu
Journal:  Commun Biol       Date:  2021-09-28
  1 in total

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