Literature DB >> 27791004

Structure and assembly model for the Trypanosoma cruzi 60S ribosomal subunit.

Zheng Liu1, Cristina Gutierrez-Vargas2, Jia Wei2, Robert A Grassucci3, Madhumitha Ramesh4, Noel Espina5, Ming Sun2, Beril Tutuncuoglu4, Susan Madison-Antenucci5, John L Woolford4, Liang Tong2, Joachim Frank6.   

Abstract

Ribosomes of trypanosomatids, a family of protozoan parasites causing debilitating human diseases, possess multiply fragmented rRNAs that together are analogous to 28S rRNA, unusually large rRNA expansion segments, and r-protein variations compared with other eukaryotic ribosomes. To investigate the architecture of the trypanosomatid ribosomes, we determined the 2.5-Å structure of the Trypanosoma cruzi ribosome large subunit by single-particle cryo-EM. Examination of this structure and comparative analysis of the yeast ribosomal assembly pathway allowed us to develop a stepwise assembly model for the eight pieces of the large subunit rRNAs and a number of ancillary "glue" proteins. This model can be applied to the characterization of Trypanosoma brucei and Leishmania spp. ribosomes as well. Together with other details, our atomic-level structure may provide a foundation for structure-based design of antitrypanosome drugs.

Entities:  

Keywords:  Trypanosoma cruzi; antitrypanosome drug design; biogenesis; multiply fragmented rRNA; ribosome structure

Mesh:

Substances:

Year:  2016        PMID: 27791004      PMCID: PMC5087005          DOI: 10.1073/pnas.1614594113

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  43 in total

1.  Accurate determination of local defocus and specimen tilt in electron microscopy.

Authors:  Joseph A Mindell; Nikolaus Grigorieff
Journal:  J Struct Biol       Date:  2003-06       Impact factor: 2.867

2.  Comparative genomics of trypanosomatid parasitic protozoa.

Authors:  Najib M El-Sayed; Peter J Myler; Gaëlle Blandin; Matthew Berriman; Jonathan Crabtree; Gautam Aggarwal; Elisabet Caler; Hubert Renauld; Elizabeth A Worthey; Christiane Hertz-Fowler; Elodie Ghedin; Christopher Peacock; Daniella C Bartholomeu; Brian J Haas; Anh-Nhi Tran; Jennifer R Wortman; U Cecilia M Alsmark; Samuel Angiuoli; Atashi Anupama; Jonathan Badger; Frederic Bringaud; Eithon Cadag; Jane M Carlton; Gustavo C Cerqueira; Todd Creasy; Arthur L Delcher; Appolinaire Djikeng; T Martin Embley; Christopher Hauser; Alasdair C Ivens; Sarah K Kummerfeld; Jose B Pereira-Leal; Daniel Nilsson; Jeremy Peterson; Steven L Salzberg; Joshua Shallom; Joana C Silva; Jaideep Sundaram; Scott Westenberger; Owen White; Sara E Melville; John E Donelson; Björn Andersson; Kenneth D Stuart; Neil Hall
Journal:  Science       Date:  2005-07-15       Impact factor: 47.728

3.  Three small RNAs within the 10 kb trypanosome rRNA transcription unit are analogous to domain VII of other eukaryotic 28S rRNAs.

Authors:  T C White; G Rudenko; P Borst
Journal:  Nucleic Acids Res       Date:  1986-12-09       Impact factor: 16.971

Review 4.  Ribosome biogenesis in the yeast Saccharomyces cerevisiae.

Authors:  John L Woolford; Susan J Baserga
Journal:  Genetics       Date:  2013-11       Impact factor: 4.562

5.  2.8-Å Cryo-EM Structure of the Large Ribosomal Subunit from the Eukaryotic Parasite Leishmania.

Authors:  Moran Shalev-Benami; Yan Zhang; Donna Matzov; Yehuda Halfon; Arie Zackay; Haim Rozenberg; Ella Zimmerman; Anat Bashan; Charles L Jaffe; Ada Yonath; Georgios Skiniotis
Journal:  Cell Rep       Date:  2016-06-30       Impact factor: 9.423

6.  Structure of the large ribosomal subunit from human mitochondria.

Authors:  Alan Brown; Alexey Amunts; Xiao-Chen Bai; Yoichiro Sugimoto; Patricia C Edwards; Garib Murshudov; Sjors H W Scheres; V Ramakrishnan
Journal:  Science       Date:  2014-10-02       Impact factor: 47.728

7.  Automated particle picking for low-contrast macromolecules in cryo-electron microscopy.

Authors:  Robert Langlois; Jesper Pallesen; Jordan T Ash; Danny Nam Ho; John L Rubinstein; Joachim Frank
Journal:  J Struct Biol       Date:  2014-03-06       Impact factor: 2.867

8.  Outcome of the first electron microscopy validation task force meeting.

Authors:  Richard Henderson; Andrej Sali; Matthew L Baker; Bridget Carragher; Batsal Devkota; Kenneth H Downing; Edward H Egelman; Zukang Feng; Joachim Frank; Nikolaus Grigorieff; Wen Jiang; Steven J Ludtke; Ohad Medalia; Pawel A Penczek; Peter B Rosenthal; Michael G Rossmann; Michael F Schmid; Gunnar F Schröder; Alasdair C Steven; David L Stokes; John D Westbrook; Willy Wriggers; Huanwang Yang; Jasmine Young; Helen M Berman; Wah Chiu; Gerard J Kleywegt; Catherine L Lawson
Journal:  Structure       Date:  2012-02-08       Impact factor: 5.006

9.  rRNA maturation in yeast cells depleted of large ribosomal subunit proteins.

Authors:  Gisela Pöll; Tobias Braun; Jelena Jakovljevic; Andreas Neueder; Steffen Jakob; John L Woolford; Herbert Tschochner; Philipp Milkereit
Journal:  PLoS One       Date:  2009-12-11       Impact factor: 3.240

10.  High-resolution cryo-electron microscopy structure of the Trypanosoma brucei ribosome.

Authors:  Yaser Hashem; Amedee des Georges; Jie Fu; Sarah N Buss; Fabrice Jossinet; Amy Jobe; Qin Zhang; Hstau Y Liao; Robert A Grassucci; Chandrajit Bajaj; Eric Westhof; Susan Madison-Antenucci; Joachim Frank
Journal:  Nature       Date:  2013-02-10       Impact factor: 49.962

View more
  35 in total

1.  Differences in the path to exit the ribosome across the three domains of life.

Authors:  Khanh Dao Duc; Sanjit S Batra; Nicholas Bhattacharya; Jamie H D Cate; Yun S Song
Journal:  Nucleic Acids Res       Date:  2019-05-07       Impact factor: 16.971

2.  A novel storage system for cryoEM samples.

Authors:  Giovanna Scapin; Winifred W Prosise; Michael K Wismer; Corey Strickland
Journal:  J Struct Biol       Date:  2017-04-19       Impact factor: 2.867

Review 3.  Determination of the ribosome structure to a resolution of 2.5 Å by single-particle cryo-EM.

Authors:  Zheng Liu; Cristina Gutierrez-Vargas; Jia Wei; Robert A Grassucci; Ming Sun; Noel Espina; Susan Madison-Antenucci; Liang Tong; Joachim Frank
Journal:  Protein Sci       Date:  2016-10-26       Impact factor: 6.725

Review 4.  Cryo-EM in drug discovery: achievements, limitations and prospects.

Authors:  Jean-Paul Renaud; Ashwin Chari; Claudio Ciferri; Wen-Ti Liu; Hervé-William Rémigy; Holger Stark; Christian Wiesmann
Journal:  Nat Rev Drug Discov       Date:  2018-06-08       Impact factor: 84.694

Review 5.  New Insights into Ribosome Structure and Function.

Authors:  Amy Jobe; Zheng Liu; Cristina Gutierrez-Vargas; Joachim Frank
Journal:  Cold Spring Harb Perspect Biol       Date:  2019-01-02       Impact factor: 10.005

6.  Cryo-EM structures of the 80S ribosomes from human parasites Trichomonas vaginalis and Toxoplasma gondii.

Authors:  Zhifei Li; Qiang Guo; Lvqin Zheng; Yongsheng Ji; Yi-Ting Xie; De-Hua Lai; Zhao-Rong Lun; Xun Suo; Ning Gao
Journal:  Cell Res       Date:  2017-08-15       Impact factor: 25.617

7.  The large repertoire of 2'-O-methylation guided by C/D snoRNAs on Trypanosoma brucei rRNA.

Authors:  K Shanmugha Rajan; Yinzhou Zhu; Katerina Adler; Tirza Doniger; Smadar Cohen-Chalamish; Ankita Srivastava; Moran Shalev-Benami; Donna Matzov; Ron Unger; Christian Tschudi; Arthur Günzl; Gordon G Carmichael; Shulamit Michaeli
Journal:  RNA Biol       Date:  2020-04-21       Impact factor: 4.652

Review 8.  Present and Emerging Methodologies in Cryo-EM Single-Particle Analysis.

Authors:  Mengyu Wu; Gabriel C Lander
Journal:  Biophys J       Date:  2020-09-01       Impact factor: 4.033

9.  Ribosome Assembly in Trypanosomatids: A Novel Therapeutic Target.

Authors:  Anyango D Kamina; Noreen Williams
Journal:  Trends Parasitol       Date:  2016-12-14

10.  High-Resolution Cryo-EM Maps and Models: A Crystallographer's Perspective.

Authors:  Alexander Wlodawer; Mi Li; Zbigniew Dauter
Journal:  Structure       Date:  2017-08-31       Impact factor: 5.006

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.