Literature DB >> 27749027

Biochemical and Spectroscopic Characterization of the Non-Heme Fe(II)- and 2-Oxoglutarate-Dependent Ethylene-Forming Enzyme from Pseudomonas syringae pv. phaseolicola PK2.

Salette Martinez1, Robert P Hausinger1.   

Abstract

The ethylene-forming enzyme (EFE) from Pseudomonas syringae pv. phaseolicola PK2 is a member of the mononuclear non-heme Fe(II)- and 2-oxoglutarate (2OG)-dependent oxygenase superfamily. This enzyme is reported to simultaneously catalyze the conversion of 2OG into ethylene and three CO2 molecules and the Cδ hydroxylation of l-arginine (l-Arg) while oxidatively decarboxylating 2OG to form succinate and carbon dioxide. A new plasmid construct for expression in recombinant Escherichia coli cells allowed for the purification of large amounts of EFE with activity greater than that previously recorded. A variety of assays were used to quantify and confirm the identity of the proposed products, including the first experimental demonstration of l-Δ1-pyrroline-5-carboxylate and guanidine derived from 5-hydroxyarginine. Selected l-Arg derivatives could induce ethylene formation without undergoing hydroxylation, demonstrating that ethylene production and l-Arg hydroxylation activities are not linked. Similarly, EFE utilizes the alternative α-keto acid 2-oxoadipate as a cosubstrate (forming glutaric acid) during the hydroxylation of l-Arg, with this reaction unlinked from ethylene formation. Kinetic constants were determined for both ethylene formation and l-Arg hydroxylation reactions. Anaerobic UV-visible difference spectra were used to monitor the binding of Fe(II) and substrates to the enzyme. On the basis of our results and what is generally known about EFE and Fe(II)- and 2OG-dependent oxygenases, an updated model for the reaction mechanism is presented.

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Year:  2016        PMID: 27749027      PMCID: PMC5444383          DOI: 10.1021/acs.biochem.6b00890

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  25 in total

1.  Purification and properties of an ethylene-forming enzyme from Pseudomonas syringae pv. phaseolicola PK2.

Authors:  K Nagahama; T Ogawa; T Fujii; M Tazaki; S Tanase; Y Morino; H Fukuda
Journal:  J Gen Microbiol       Date:  1991-10

2.  Biosynthesis of streptolidine involved two unexpected intermediates produced by a dihydroxylase and a cyclase through unusual mechanisms.

Authors:  Chin-Yuan Chang; Syue-Yi Lyu; Yu-Chen Liu; Ning-Shian Hsu; Chih-Chung Wu; Cheng-Fong Tang; Kuan-Hung Lin; Jin-Yuan Ho; Chang-Jer Wu; Ming-Daw Tsai; Tsung-Lin Li
Journal:  Angew Chem Int Ed Engl       Date:  2014-01-21       Impact factor: 15.336

3.  Assay of ornithine aminotransferase with ninhydrin.

Authors:  H R Kim; H W Rho; J W Park; B H Park; J S Kim; M W Lee
Journal:  Anal Biochem       Date:  1994-12       Impact factor: 3.365

4.  Ethylene formation by cell-free extracts of Escherichia coli.

Authors:  J E Ince; C J Knowles
Journal:  Arch Microbiol       Date:  1986-11       Impact factor: 2.552

5.  Comparison of Ethylene Production by Pseudomonas syringae and Ralstonia solanacearum.

Authors:  H Weingart; B Völksch; M S Ullrich
Journal:  Phytopathology       Date:  1999-05       Impact factor: 4.025

6.  A combined approach to improving large-scale production of tobacco etch virus protease.

Authors:  Paul G Blommel; Brian G Fox
Journal:  Protein Expr Purif       Date:  2007-04-25       Impact factor: 1.650

7.  An NADH:Fe(III)EDTA oxidoreductase from Cryptococcus albidus: an enzyme involved in ethylene production in vivo?

Authors:  H Fukuda; M Takahashi; T Fujii; M Tazaki; T Ogawa
Journal:  FEMS Microbiol Lett       Date:  1989-07-01       Impact factor: 2.742

8.  A computational analysis of stoichiometric constraints and trade-offs in cyanobacterial biofuel production.

Authors:  Henning Knoop; Ralf Steuer
Journal:  Front Bioeng Biotechnol       Date:  2015-04-20

9.  Comparative sequence analysis and mutagenesis of ethylene forming enzyme (EFE) 2-oxoglutarate/Fe(II)-dependent dioxygenase homologs.

Authors:  Nina Johansson; Karl O Persson; Christer Larsson; Joakim Norbeck
Journal:  BMC Biochem       Date:  2014-10-02       Impact factor: 4.059

10.  Ethylene synthesis and regulated expression of recombinant protein in Synechocystis sp. PCC 6803.

Authors:  Fernando Guerrero; Verónica Carbonell; Matteo Cossu; Danilo Correddu; Patrik R Jones
Journal:  PLoS One       Date:  2012-11-21       Impact factor: 3.240

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  17 in total

Review 1.  Dioxygen activation by nonheme iron enzymes with the 2-His-1-carboxylate facial triad that generate high-valent oxoiron oxidants.

Authors:  Subhasree Kal; Lawrence Que
Journal:  J Biol Inorg Chem       Date:  2017-01-10       Impact factor: 3.358

Review 2.  Glutarate L-2-hydroxylase (CsiD/GlaH) is an archetype Fe(II)/2-oxoglutarate-dependent dioxygenase.

Authors:  Caitlyn Q Herr; Lee Macomber; Efthalia Kalliri; Robert P Hausinger
Journal:  Adv Protein Chem Struct Biol       Date:  2019-06-10       Impact factor: 3.507

3.  Structural Origin of the Large Redox-Linked Reorganization in the 2-Oxoglutarate Dependent Oxygenase, TauD.

Authors:  Christopher W John; Robert P Hausinger; Denis A Proshlyakov
Journal:  J Am Chem Soc       Date:  2019-09-11       Impact factor: 15.419

4.  An Iron(IV)-Oxo Intermediate Initiating l-Arginine Oxidation but Not Ethylene Production by the 2-Oxoglutarate-Dependent Oxygenase, Ethylene-Forming Enzyme.

Authors:  Rachelle A Copeland; Katherine M Davis; Tokufu Kent C Shoda; Elizabeth J Blaesi; Amie K Boal; Carsten Krebs; J Martin Bollinger
Journal:  J Am Chem Soc       Date:  2021-02-01       Impact factor: 15.419

5.  Assembly of a mononuclear ferrous site using a bulky aldehyde-imidazole ligand.

Authors:  Jia Li; Monika A Molenda; Shannon M Biros; Richard J Staples; Ferman A Chavez
Journal:  Inorganica Chim Acta       Date:  2017-05-13       Impact factor: 2.545

6.  Structures and Mechanisms of the Non-Heme Fe(II)- and 2-Oxoglutarate-Dependent Ethylene-Forming Enzyme: Substrate Binding Creates a Twist.

Authors:  Salette Martinez; Matthias Fellner; Caitlyn Q Herr; Anastasia Ritchie; Jian Hu; Robert P Hausinger
Journal:  J Am Chem Soc       Date:  2017-08-22       Impact factor: 15.419

7.  Nitrene Transfer Catalyzed by a Non-Heme Iron Enzyme and Enhanced by Non-Native Small-Molecule Ligands.

Authors:  Nathaniel W Goldberg; Anders M Knight; Ruijie K Zhang; Frances H Arnold
Journal:  J Am Chem Soc       Date:  2019-12-06       Impact factor: 15.419

8.  Thermodynamics of Iron(II) and Substrate Binding to the Ethylene-Forming Enzyme.

Authors:  Mingjie Li; Salette Martinez; Robert P Hausinger; Joseph P Emerson
Journal:  Biochemistry       Date:  2018-09-18       Impact factor: 3.162

Review 9.  Recent examples of α-ketoglutarate-dependent mononuclear non-haem iron enzymes in natural product biosyntheses.

Authors:  Shu-Shan Gao; Nathchar Naowarojna; Ronghai Cheng; Xueting Liu; Pinghua Liu
Journal:  Nat Prod Rep       Date:  2018-08-15       Impact factor: 13.423

10.  Structural and stereoelectronic insights into oxygenase-catalyzed formation of ethylene from 2-oxoglutarate.

Authors:  Zhihong Zhang; Tristan J Smart; Hwanho Choi; Florence Hardy; Christopher T Lohans; Martine I Abboud; Melodie S W Richardson; Robert S Paton; Michael A McDonough; Christopher J Schofield
Journal:  Proc Natl Acad Sci U S A       Date:  2017-04-18       Impact factor: 11.205

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