Literature DB >> 33522811

An Iron(IV)-Oxo Intermediate Initiating l-Arginine Oxidation but Not Ethylene Production by the 2-Oxoglutarate-Dependent Oxygenase, Ethylene-Forming Enzyme.

Rachelle A Copeland, Katherine M Davis, Tokufu Kent C Shoda, Elizabeth J Blaesi, Amie K Boal, Carsten Krebs, J Martin Bollinger.   

Abstract

Ethylene-forming enzyme (EFE) is an ambifunctional iron(II)- and 2-oxoglutarate-dependent (Fe/2OG) oxygenase. In its major (EF) reaction, it converts carbons 1, 2, and 5 of 2OG to CO2 and carbons 3 and 4 to ethylene, a four-electron oxidation drastically different from the simpler decarboxylation of 2OG to succinate mediated by all other Fe/2OG enzymes. EFE also catalyzes a minor reaction, in which the normal decarboxylation is coupled to oxidation of l-arginine (a required activator for the EF pathway), resulting in its conversion to l-glutamate semialdehyde and guanidine. Here we show that, consistent with precedent, the l-Arg-oxidation (RO) pathway proceeds via an iron(IV)-oxo (ferryl) intermediate. Use of 5,5-[2H2]-l-Arg slows decay of the ferryl complex by >16-fold, implying that RO is initiated by hydrogen-atom transfer (HAT) from C5. That this large substrate deuterium kinetic isotope effect has no impact on the EF:RO partition ratio implies that the same ferryl intermediate cannot be on the EF pathway; the pathways must diverge earlier. Consistent with this conclusion, the variant enzyme bearing the Asp191Glu ligand substitution accumulates ∼4 times as much of the ferryl complex as the wild-type enzyme and exhibits a ∼40-fold diminished EF:RO partition ratio. The selective detriment of this nearly conservative substitution to the EF pathway implies that it has unusually stringent stereoelectronic requirements. An active-site, like-charge guanidinium pair, which involves the l-Arg substrate/activator and is unique to EFE among four crystallographically characterized l-Arg-modifying Fe/2OG oxygenases, may serve to selectively stabilize the transition state leading to the unique EF branch.

Entities:  

Year:  2021        PMID: 33522811      PMCID: PMC7962147          DOI: 10.1021/jacs.0c10923

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  45 in total

1.  Studies on deacetoxycephalosporin C synthase support a consensus mechanism for 2-oxoglutarate dependent oxygenases.

Authors:  Hanna Tarhonskaya; Andrea Szöllössi; Ivanhoe K H Leung; Jacob T Bush; Luc Henry; Rasheduzzaman Chowdhury; Aman Iqbal; Timothy D W Claridge; Christopher J Schofield; Emily Flashman
Journal:  Biochemistry       Date:  2014-04-11       Impact factor: 3.162

2.  Kinetic dissection of the catalytic mechanism of taurine:alpha-ketoglutarate dioxygenase (TauD) from Escherichia coli.

Authors:  John C Price; Eric W Barr; Lee M Hoffart; Carsten Krebs; J Martin Bollinger
Journal:  Biochemistry       Date:  2005-06-07       Impact factor: 3.162

3.  Evidence for Modulation of Oxygen Rebound Rate in Control of Outcome by Iron(II)- and 2-Oxoglutarate-Dependent Oxygenases.

Authors:  Juan Pan; Eliott S Wenger; Megan L Matthews; Christopher J Pollock; Minakshi Bhardwaj; Amelia J Kim; Benjamin D Allen; Robert B Grossman; Carsten Krebs; J Martin Bollinger
Journal:  J Am Chem Soc       Date:  2019-09-16       Impact factor: 15.419

4.  Visualizing the Reaction Cycle in an Iron(II)- and 2-(Oxo)-glutarate-Dependent Hydroxylase.

Authors:  Andrew J Mitchell; Noah P Dunham; Ryan J Martinie; Jonathan A Bergman; Christopher J Pollock; Kai Hu; Benjamin D Allen; Wei-Chen Chang; Alexey Silakov; J Martin Bollinger; Carsten Krebs; Amie K Boal
Journal:  J Am Chem Soc       Date:  2017-09-20       Impact factor: 15.419

Review 5.  The 2-His-1-carboxylate facial triad: a versatile platform for dioxygen activation by mononuclear non-heme iron(II) enzymes.

Authors:  Kevin D Koehntop; Joseph P Emerson; Lawrence Que
Journal:  J Biol Inorg Chem       Date:  2005-03-01       Impact factor: 3.358

6.  Oxalate decarboxylase requires manganese and dioxygen for activity. Overexpression and characterization of Bacillus subtilis YvrK and YoaN.

Authors:  A Tanner; L Bowater; S A Fairhurst; S Bornemann
Journal:  J Biol Chem       Date:  2001-08-23       Impact factor: 5.157

7.  Metal ligand substitution and evidence for quinone formation in taurine/alpha-ketoglutarate dioxygenase.

Authors:  Piotr K Grzyska; Tina A Müller; Melody G Campbell; Robert P Hausinger
Journal:  J Inorg Biochem       Date:  2007-02-03       Impact factor: 4.155

8.  Two reactions are simultaneously catalyzed by a single enzyme: the arginine-dependent simultaneous formation of two products, ethylene and succinate, from 2-oxoglutarate by an enzyme from Pseudomonas syringae.

Authors:  H Fukuda; T Ogawa; M Tazaki; K Nagahama; T Fujii; S Tanase; Y Morino
Journal:  Biochem Biophys Res Commun       Date:  1992-10-30       Impact factor: 3.575

Review 9.  Non-heme Fe(IV)-oxo intermediates.

Authors:  Carsten Krebs; Danica Galonić Fujimori; Christopher T Walsh; J Martin Bollinger
Journal:  Acc Chem Res       Date:  2007-06-02       Impact factor: 22.384

10.  Substrate Binding Mode and Molecular Basis of a Specificity Switch in Oxalate Decarboxylase.

Authors:  Wen Zhu; Lindsey M Easthon; Laurie A Reinhardt; Chingkuang Tu; Steven E Cohen; David N Silverman; Karen N Allen; Nigel G J Richards
Journal:  Biochemistry       Date:  2016-04-04       Impact factor: 3.162

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  2 in total

1.  Discovery of a Ni2+-dependent guanidine hydrolase in bacteria.

Authors:  D Funck; M Sinn; J R Fleming; M Stanoppi; J Dietrich; R López-Igual; O Mayans; J S Hartig
Journal:  Nature       Date:  2022-03-09       Impact factor: 69.504

2.  Dissecting the Mechanism of the Nonheme Iron Endoperoxidase FtmOx1 Using Substrate Analogues.

Authors:  Guoliang Zhu; Wupeng Yan; Xinye Wang; Ronghai Cheng; Nathchar Naowarojna; Kun Wang; Jun Wang; Heng Song; Yuyang Wang; Hairong Liu; Xuekui Xia; Catherine E Costello; Xueting Liu; Lixin Zhang; Pinghua Liu
Journal:  JACS Au       Date:  2022-06-10
  2 in total

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