Literature DB >> 28420789

Structural and stereoelectronic insights into oxygenase-catalyzed formation of ethylene from 2-oxoglutarate.

Zhihong Zhang1, Tristan J Smart1, Hwanho Choi1, Florence Hardy1, Christopher T Lohans1, Martine I Abboud1, Melodie S W Richardson1, Robert S Paton1, Michael A McDonough2, Christopher J Schofield2.   

Abstract

Ethylene is important in industry and biological signaling. In plants, ethylene is produced by oxidation of 1-aminocyclopropane-1-carboxylic acid, as catalyzed by 1-aminocyclopropane-1-carboxylic acid oxidase. Bacteria catalyze ethylene production, but via the four-electron oxidation of 2-oxoglutarate to give ethylene in an arginine-dependent reaction. Crystallographic and biochemical studies on the Pseudomonas syringae ethylene-forming enzyme reveal a branched mechanism. In one branch, an apparently typical 2-oxoglutarate oxygenase reaction to give succinate, carbon dioxide, and sometimes pyrroline-5-carboxylate occurs. Alternatively, Grob-type oxidative fragmentation of a 2-oxoglutarate-derived intermediate occurs to give ethylene and carbon dioxide. Crystallographic and quantum chemical studies reveal that fragmentation to give ethylene is promoted by binding of l-arginine in a nonoxidized conformation and of 2-oxoglutarate in an unprecedented high-energy conformation that favors ethylene, relative to succinate formation.

Entities:  

Keywords:  2-oxoglutarate-dependent oxygenases; ethylene-forming enzyme; hydroxylase; oxidoreductase; plant development

Mesh:

Substances:

Year:  2017        PMID: 28420789      PMCID: PMC5422762          DOI: 10.1073/pnas.1617760114

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  27 in total

1.  One motif--many different reactions.

Authors:  L Que
Journal:  Nat Struct Biol       Date:  2000-03

2.  Ethylene-producing bacteria that ripen fruit.

Authors:  Fabio Digiacomo; Gabriele Girelli; Bruno Aor; Caterina Marchioretti; Michele Pedrotti; Thomas Perli; Emil Tonon; Viola Valentini; Damiano Avi; Giovanna Ferrentino; Andrea Dorigato; Paola Torre; Olivier Jousson; Sheref S Mansy; Cristina Del Bianco
Journal:  ACS Synth Biol       Date:  2014-11-29       Impact factor: 5.110

3.  Monitoring the activity of 2-oxoglutarate dependent histone demethylases by NMR spectroscopy: direct observation of formaldehyde.

Authors:  Richard J Hopkinson; Refaat B Hamed; Nathan R Rose; Timothy D W Claridge; Christopher J Schofield
Journal:  Chembiochem       Date:  2010-03-01       Impact factor: 3.164

4.  Purification and properties of an ethylene-forming enzyme from Pseudomonas syringae pv. phaseolicola PK2.

Authors:  K Nagahama; T Ogawa; T Fujii; M Tazaki; S Tanase; Y Morino; H Fukuda
Journal:  J Gen Microbiol       Date:  1991-10

5.  Bicarbonate/CO(2)-Facilitated Conversion of 1-Amino-cyclopropane-1-carboxylic Acid to Ethylene in Model Systems and Intact Tissues.

Authors:  D G McRae; J A Coker; R L Legge; J E Thompson
Journal:  Plant Physiol       Date:  1983-11       Impact factor: 8.340

6.  Structural basis for the erythro-stereospecificity of the L-arginine oxygenase VioC in viomycin biosynthesis.

Authors:  Verena Helmetag; Stefan A Samel; Michael G Thomas; Mohamed A Marahiel; Lars-Oliver Essen
Journal:  FEBS J       Date:  2009-05-26       Impact factor: 5.542

7.  Purification and characterization of 1-aminocyclopropane-1-carboxylate oxidase from apple fruit.

Authors:  J G Dong; J C Fernández-Maculet; S F Yang
Journal:  Proc Natl Acad Sci U S A       Date:  1992-10-15       Impact factor: 11.205

8.  Crystal structure of a clavaminate synthase-Fe(II)-2-oxoglutarate-substrate-NO complex: evidence for metal centered rearrangements.

Authors:  Zhihong Zhang; Jing shan Ren; Karl Harlos; Colin H McKinnon; Ian J Clifton; Christopher J Schofield
Journal:  FEBS Lett       Date:  2002-04-24       Impact factor: 4.124

9.  Thioester hydrolysis and C-C bond formation by carboxymethylproline synthase from the crotonase superfamily.

Authors:  Edward T Batchelar; Refaat B Hamed; Christian Ducho; Timothy D W Claridge; Mariola J Edelmann; Benedikt Kessler; Christopher J Schofield
Journal:  Angew Chem Int Ed Engl       Date:  2008       Impact factor: 15.336

Review 10.  Structural studies on 2-oxoglutarate oxygenases and related double-stranded beta-helix fold proteins.

Authors:  Ian J Clifton; Michael A McDonough; Dominic Ehrismann; Nadia J Kershaw; Nicolas Granatino; Christopher J Schofield
Journal:  J Inorg Biochem       Date:  2006-03-02       Impact factor: 4.155

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  11 in total

1.  Hydrogen Donation but not Abstraction by a Tyrosine (Y68) during Endoperoxide Installation by Verruculogen Synthase (FtmOx1).

Authors:  Noah P Dunham; José M Del Río Pantoja; Bo Zhang; Lauren J Rajakovich; Benjamin D Allen; Carsten Krebs; Amie K Boal; J Martin Bollinger
Journal:  J Am Chem Soc       Date:  2019-06-12       Impact factor: 15.419

2.  An Iron(IV)-Oxo Intermediate Initiating l-Arginine Oxidation but Not Ethylene Production by the 2-Oxoglutarate-Dependent Oxygenase, Ethylene-Forming Enzyme.

Authors:  Rachelle A Copeland; Katherine M Davis; Tokufu Kent C Shoda; Elizabeth J Blaesi; Amie K Boal; Carsten Krebs; J Martin Bollinger
Journal:  J Am Chem Soc       Date:  2021-02-01       Impact factor: 15.419

Review 3.  Amazing Diversity in Biochemical Roles of Fe(II)/2-Oxoglutarate Oxygenases.

Authors:  Caitlyn Q Herr; Robert P Hausinger
Journal:  Trends Biochem Sci       Date:  2018-04-27       Impact factor: 13.807

4.  Structures and Mechanisms of the Non-Heme Fe(II)- and 2-Oxoglutarate-Dependent Ethylene-Forming Enzyme: Substrate Binding Creates a Twist.

Authors:  Salette Martinez; Matthias Fellner; Caitlyn Q Herr; Anastasia Ritchie; Jian Hu; Robert P Hausinger
Journal:  J Am Chem Soc       Date:  2017-08-22       Impact factor: 15.419

5.  Nitrene Transfer Catalyzed by a Non-Heme Iron Enzyme and Enhanced by Non-Native Small-Molecule Ligands.

Authors:  Nathaniel W Goldberg; Anders M Knight; Ruijie K Zhang; Frances H Arnold
Journal:  J Am Chem Soc       Date:  2019-12-06       Impact factor: 15.419

6.  Thermodynamics of Iron(II) and Substrate Binding to the Ethylene-Forming Enzyme.

Authors:  Mingjie Li; Salette Martinez; Robert P Hausinger; Joseph P Emerson
Journal:  Biochemistry       Date:  2018-09-18       Impact factor: 3.162

Review 7.  Recent examples of α-ketoglutarate-dependent mononuclear non-haem iron enzymes in natural product biosyntheses.

Authors:  Shu-Shan Gao; Nathchar Naowarojna; Ronghai Cheng; Xueting Liu; Pinghua Liu
Journal:  Nat Prod Rep       Date:  2018-08-15       Impact factor: 13.423

8.  Vanadyl as a Stable Structural Mimic of Reactive Ferryl Intermediates in Mononuclear Nonheme-Iron Enzymes.

Authors:  Ryan J Martinie; Christopher J Pollock; Megan L Matthews; J Martin Bollinger; Carsten Krebs; Alexey Silakov
Journal:  Inorg Chem       Date:  2017-09-29       Impact factor: 5.165

Review 9.  Bio-production of gaseous alkenes: ethylene, isoprene, isobutene.

Authors:  James Wilson; Sarah Gering; Jessica Pinard; Ryan Lucas; Brandon R Briggs
Journal:  Biotechnol Biofuels       Date:  2018-08-29       Impact factor: 6.040

Review 10.  Activation of microbial secondary metabolic pathways: Avenues and challenges.

Authors:  Bikash Baral; Amir Akhgari; Mikko Metsä-Ketelä
Journal:  Synth Syst Biotechnol       Date:  2018-09-12
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