| Literature DB >> 27716427 |
Silvia Torices1,2, Antonio Julia3, Pedro Muñoz4, Ignacio Varela5, Alejandro Balsa6, Sara Marsal3, Antonio Fernández-Nebro7, Francisco Blanco8, Marcos López-Hoyos9, Víctor Martinez-Taboada1,10, Jose L Fernández-Luna11.
Abstract
BACKGROUND: Toll-like receptor (TLR) family members are key players in inflammation. TLR10 has been poorly studied in chronic inflammatory disorders, and its clinical relevance in rheumatoid arthritis (RA) is as yet unknown. We aimed at identifying TLR10 variants within all coding regions of the gene in patients with RA as well as studying their functional and clinical significance.Entities:
Keywords: Infliximab; NFkB; Rheumatoid arthritis; TLR10 variant
Mesh:
Substances:
Year: 2016 PMID: 27716427 PMCID: PMC5050569 DOI: 10.1186/s13075-016-1113-z
Source DB: PubMed Journal: Arthritis Res Ther ISSN: 1478-6354 Impact factor: 5.156
Main features of two cohorts of patients with rheumatoid arthritis
| Cohort I ( | Cohort II ( | |
|---|---|---|
| Females, % | 73.1 | 76.8 |
| Mean age, years | 65.6 ± 14.5a | 46.5 ± 14.5a |
| Duration of follow-up, months | 123.8 ± 91.5a | 171.6 ± 123.6a |
| Extraarticular manifestations, % | 22.2 | – |
| Presence of joint damage, % | – | 100 |
| RF-positive, % | 64.8 | 74.6 |
| ACPA-positive, % | 62.2 | 74.1 |
| Number of previous DMARDs | 2.2 ± 1.5a | 1.7 ± 1.5a |
| Number of previous biologic therapies | 1.8 ± 1.2a | 0.6 ± 0.9a |
Abbreviations: RF Rheumatoid factor, DMARDs Disease-modifying antirheumatic drugs, ACPA Antibodies to citrullinated protein antigens
aMean ± SD
Sixteen allele variants of the TLR10 gene found by next-generation sequencing in control and rheumatoid arthritis populations
| Reference SNP ID | Reference allele | Alternative allele | MAF |
| AA change | Functional class | SIFT prediction | SNPs3D prediction |
|---|---|---|---|---|---|---|---|---|
| rs10776482 | A | G | 0.29 | 0.2306 | D809 | Silent | nr | nr |
| rs4129008 | C | T | 0.01 | 0.5652 | R799Q | Missense | − | − |
| rs4129009 | T | C | 0.271 | 0.1889 | I775V | Missense | − | − |
| rs10776483 | A | G | 0.302 | 0.3296 | H724 | Silent | nr | nr |
| rs11466658 | G | A | 0.026 | 0.1599 | R525W | Missense | − | − |
| rs11466657 | A | G | 0.089 | 0.04327 | I473T | Missense | + | + |
| rs11096955 | T | G | 0.422 | 0.07296 | I369L | Missense | − | − |
| rs11096956 | C | A | 0.292 | 0.3918 | P344 | Silent | nr | nr |
| rs11466653 | A | G | 0.026 | 0.5824 | M326T | Missense | − | nr |
| rs11466652 | T | C | 0.13 | 0.1403 | K303 | Silent | nr | nr |
| rs11466651 | C | T | 0.026 | 0.5824 | V298I | Missense | − | − |
| rs11096957 | T | G | 0.438 | 0.015 | N241H | Missense | − | − |
| rs11466650 | A | G | 0.0005 | 0.137 | L167P | Missense | + | + |
| rs11466649 | C | A | 0.026 | 0.5824 | A163S | Missense | − | − |
| rs10856837 | C | T | 0.026 | 0.5824 | T37 | Silent | nr | nr |
| rs10856838 | A | T | 0.146 | 0.5813 | I13 | Silent | nr | nr |
Abbreviations: MAF Minor allele frequency, + Damaging change, − No damaging change, nr No records, SNP Single-nucleotide polymorphism
Fig. 1TLR10 gene variants. a Schematic representation of TLR10 protein that illustrates the position of the missense variants identified by next-generation sequencing. b Genotype distribution of the I473T variant in the independent cohort of 1493 healthy control subjects (HC) and 1201 patients with rheumatoid arthritis (RA). c TLR10 genotype frequencies in HapMap populations. The following population samples were included: CEU (Utah residents with Northern and Western European ancestry from the Centre d’etude du Polymorphisme Humain [CEPH] collection), HCB (Han Chinese in Beijing), JPT (Japanese in Tokyo, Japan), YRI (Yoruba in Ibadan, Nigeria), TSI (Toscani in Italy). LRR Leucine-rich repeats, TLR Toll-like receptor, TM Transmembrane domain, TIR Toll/interleukin-1 receptor domain
Fig. 2Association of the I473T variant with disease severity in patients with RA. a Frequency of clinical parameters associated with severity in AA + AG and GG genotypes in a cohort of 453 patients. Differences were analyzed with the Fisher’s exact test. RF Positive for (high levels of) rheumatoid factor, ACPA Seropositive for antibodies to citrullinated protein antigens. b Disease severity associated to the G allele in 1201 patients with RA. The β value (regression coefficient), used to evaluate the effect of I473T variant (genetic risk), was estimated for a number of clinical findings. A positive regression coefficient means that the variant increases risk. Dotted lines indicate cutoff values. Clinical parameters were categorized as binary variables. Significance of the β value was determined by using the Wald test. Eccp/years Association with erosions in ACPA+ patients including the years of disease evolution; Eccp/years-women Association with erosions in ACPA+ female patients including the years of disease evolution, IFX-EULAR Association with response to infliximab (European League Against Rheumatism response criteria: moderate/good vs none), IFX-DAS28 Association with change in Disease Activity Score in 28 joints in patients treated with infliximab
Fig. 3Regulation of nuclear factor kappa-light-chain-enhancer of activated B cells (NFkB) transcriptional activity by the I473T variant. a Three-dimensional structure of Toll-like receptor 10 (TLR10) visualized by using the Jmol viewer showing the location of residue I473. NAG 2-(acetylamino)-2-deoxy-β-d-glucopyranose. b and c K562 and U937 cells were cotransfected with wild-type (wt) TLR10 or its mutated variant (mut) and a reporter vector containing NFkB-responsive sequences. Cells were stimulated with 10 ng/ml tumor necrosis factor-α (TNFα) for 24 h, and then cell extracts were prepared and analyzed for luciferase activity. d and e K562 and U937 cells transfected with the indicated TLR10 variants were treated with TNFα in the presence or absence of infliximab, and luciferase activity was analyzed. Histograms show the mean + SD of three independent experiments. *p < 0.05
Fig. 4Regulation of the levels of nuclear factor kappa-light-chain-enhancer of activated B cells (NFkB) target genes by the I473T variant. U937 and K562 cells were transfected with Toll-like receptor 10 (TLR10) (wild type [wt] or mutated variant [mut]) and then treated or not with 20 ng/ml tumor necrosis factor-α (TNFα) for 24 h. The expression of NFkB target genes chemokine (C-C motif) ligand 2 (CCL2) (a, d), TNF-related apoptosis-inducing ligand (TRAIL) (b, e), and TNFα (c) were determined by performing quantitative real-time polymerase chain reactions. f Cells transfected with the indicated variants were treated with TNFα in the presence or absence of infliximab, and, 24 h later, the messenger RNA (mRNA) levels of CCL2 were determined. β-actin was used for normalization. C Cells transfected with empty vector as an additional control. Histograms show the mean ± SD of three independent experiments. *p < 0.05