Literature DB >> 27708052

A chemical biology route to site-specific authentic protein modifications.

Aerin Yang1, Sura Ha1, Jihye Ahn2, Rira Kim1, Sungyoon Kim1, Younghoon Lee1, Jaehoon Kim2, Dieter Söll3, Hee-Yoon Lee1, Hee-Sung Park1.   

Abstract

Many essential biological processes are controlled by posttranslational protein modifications. The inability to synthetically attain the diversity enabled by these modifications limits functional studies of many proteins. We designed a three-step approach for installing authentic posttranslational modifications in recombinant proteins. We first use the established O-phosphoserine (Sep) orthogonal translation system to create a Sep-containing recombinant protein. The Sep residue is then dephosphorylated to dehydroalanine (Dha). Last, conjugate addition of alkyl iodides to Dha, promoted by zinc and copper, enables chemoselective carbon-carbon bond formation. To validate our approach, we produced histone H3, ubiquitin, and green fluorescent protein variants with site-specific modifications, including different methylations of H3K79. The methylated histones stimulate transcription through histone acetylation. This approach offers a powerful tool to engineer diverse designer proteins.
Copyright © 2016, American Association for the Advancement of Science.

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Year:  2016        PMID: 27708052      PMCID: PMC5135561          DOI: 10.1126/science.aah4428

Source DB:  PubMed          Journal:  Science        ISSN: 0036-8075            Impact factor:   47.728


  22 in total

Review 1.  Adding new chemistries to the genetic code.

Authors:  Chang C Liu; Peter G Schultz
Journal:  Annu Rev Biochem       Date:  2010       Impact factor: 23.643

2.  Genetically directing ɛ-N, N-dimethyl-L-lysine in recombinant histones.

Authors:  Duy P Nguyen; Maria M Garcia Alai; Satpal Virdee; Jason W Chin
Journal:  Chem Biol       Date:  2010-10-29

3.  A biosynthetic route to dehydroalanine-containing proteins.

Authors:  Jiangyun Wang; Stefan M Schiller; Peter G Schultz
Journal:  Angew Chem Int Ed Engl       Date:  2007       Impact factor: 15.336

4.  Site-specific incorporation of methyl- and acetyl-lysine analogues into recombinant proteins.

Authors:  Jiantao Guo; Jiangyun Wang; Jong Seok Lee; Peter G Schultz
Journal:  Angew Chem Int Ed Engl       Date:  2008       Impact factor: 15.336

5.  Free-radical carbon-carbon bond formation in organic synthesis.

Authors:  D J Hart
Journal:  Science       Date:  1984-03-02       Impact factor: 47.728

Review 6.  Histones: at the crossroads of peptide and protein chemistry.

Authors:  Manuel M Müller; Tom W Muir
Journal:  Chem Rev       Date:  2014-10-20       Impact factor: 60.622

7.  Expanding the genetic code of Escherichia coli with phosphoserine.

Authors:  Hee-Sung Park; Michael J Hohn; Takuya Umehara; Li-Tao Guo; Edith M Osborne; Jack Benner; Christopher J Noren; Jesse Rinehart; Dieter Söll
Journal:  Science       Date:  2011-08-26       Impact factor: 47.728

8.  A facile strategy for selective incorporation of phosphoserine into histones.

Authors:  Sangsik Lee; Seunghee Oh; Aerin Yang; Jihyo Kim; Dieter Söll; Daeyoup Lee; Hee-Sung Park
Journal:  Angew Chem Int Ed Engl       Date:  2013-03-26       Impact factor: 15.336

9.  C-C bond formation via copper-catalyzed conjugate addition reactions to enones in water at room temperature.

Authors:  Bruce H Lipshutz; Shenlin Huang; Wendy Wen Yi Leong; Guofu Zhong; Nicholas A Isley
Journal:  J Am Chem Soc       Date:  2012-11-28       Impact factor: 15.419

10.  The site-specific installation of methyl-lysine analogs into recombinant histones.

Authors:  Matthew D Simon; Feixia Chu; Lisa R Racki; Cecile C de la Cruz; Alma L Burlingame; Barbara Panning; Geeta J Narlikar; Kevan M Shokat
Journal:  Cell       Date:  2007-03-09       Impact factor: 41.582

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  64 in total

Review 1.  Oxygen activation by mononuclear nonheme iron dioxygenases involved in the degradation of aromatics.

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Journal:  J Biol Inorg Chem       Date:  2017-01-13       Impact factor: 3.358

2.  A Versatile Approach for Site-Specific Lysine Acylation in Proteins.

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Journal:  Angew Chem Int Ed Engl       Date:  2017-01-02       Impact factor: 15.336

3.  Kinetically guided radical-based synthesis of C(sp3)-C(sp3) linkages on DNA.

Authors:  Jie Wang; Helena Lundberg; Shota Asai; Pedro Martín-Acosta; Jason S Chen; Stephen Brown; William Farrell; Russell G Dushin; Christopher J O'Donnell; Anokha S Ratnayake; Paul Richardson; Zhiqing Liu; Tian Qin; Donna G Blackmond; Phil S Baran
Journal:  Proc Natl Acad Sci U S A       Date:  2018-06-26       Impact factor: 11.205

4.  Biocon's target factory.

Authors:  Thomas X Neenan; Robert E Burrier; Sunghoon Kim
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5.  Utilizing Selenocysteine for Expressed Protein Ligation and Bioconjugations.

Authors:  Jun Liu; Qingqing Chen; Sharon Rozovsky
Journal:  J Am Chem Soc       Date:  2017-02-27       Impact factor: 15.419

6.  Redox-based reagents for chemoselective methionine bioconjugation.

Authors:  Shixian Lin; Xiaoyu Yang; Shang Jia; Amy M Weeks; Michael Hornsby; Peter S Lee; Rita V Nichiporuk; Anthony T Iavarone; James A Wells; F Dean Toste; Christopher J Chang
Journal:  Science       Date:  2017-02-10       Impact factor: 47.728

7.  Proteins with Site-Specific Lysine Methylation.

Authors:  Zhipeng A Wang; Wenshe R Liu
Journal:  Chemistry       Date:  2017-08-01       Impact factor: 5.236

Review 8.  Reactive Enamines and Imines In Vivo: Lessons from the RidA Paradigm.

Authors:  Andrew J Borchert; Dustin C Ernst; Diana M Downs
Journal:  Trends Biochem Sci       Date:  2019-05-15       Impact factor: 13.807

9.  Constructing New Bioorthogonal Reagents and Reactions.

Authors:  R David Row; Jennifer A Prescher
Journal:  Acc Chem Res       Date:  2018-05-04       Impact factor: 22.384

Review 10.  Synthesis and semisynthesis of selenopeptides and selenoproteins.

Authors:  Jun Liu; Rujin Cheng; Sharon Rozovsky
Journal:  Curr Opin Chem Biol       Date:  2018-04-30       Impact factor: 8.822

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