Literature DB >> 31103411

Reactive Enamines and Imines In Vivo: Lessons from the RidA Paradigm.

Andrew J Borchert1, Dustin C Ernst2, Diana M Downs3.   

Abstract

Metabolic networks are webs of integrated reactions organized to maximize growth and replication while minimizing the detrimental impact that reactive metabolites can have on fitness. Enamines and imines, such as 2-aminoacrylate (2AA), are reactive metabolites produced as short-lived intermediates in a number of enzymatic processes. Left unchecked, the inherent reactivity of enamines and imines may perturb the metabolic network. Genetic and biochemical studies have outlined a role for the broadly conserved reactive intermediate deaminase (Rid) (YjgF/YER057c/UK114) protein family, in particular RidA, in catalyzing the hydrolysis of enamines and imines to their ketone product. Herein, we discuss new findings regarding the biological significance of enamine and imine production and outline the importance of RidA in controlling the accumulation of reactive metabolites.
Copyright © 2019 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  2-aminoacrylate stress; RidA; enamine/imine metabolism; reactive metabolite

Year:  2019        PMID: 31103411      PMCID: PMC6760865          DOI: 10.1016/j.tibs.2019.04.011

Source DB:  PubMed          Journal:  Trends Biochem Sci        ISSN: 0968-0004            Impact factor:   13.807


  81 in total

1.  A test case for structure-based functional assignment: the 1.2 A crystal structure of the yjgF gene product from Escherichia coli.

Authors:  K Volz
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Review 2.  The manifold of vitamin B6 dependent enzymes.

Authors:  G Schneider; H Käck; Y Lindqvist
Journal:  Structure       Date:  2000-01-15       Impact factor: 5.006

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Authors: 
Journal:  Nature       Date:  2000-07-27       Impact factor: 49.962

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Authors:  S D Gorham; N D Light; A M Diamond; M J Willins; A J Bailey; T J Wess; N J Leslie
Journal:  Int J Biol Macromol       Date:  1992-06       Impact factor: 6.953

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Authors:  M FLAVIN; C SLAUGHTER
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6.  CATALYTIC PROPERTIES OF TRYPTOPHANASE, A MULTIFUNCTIONAL PYRIDOXAL PHOSPHATE ENZYME.

Authors:  W A NEWTON; E E SNELL
Journal:  Proc Natl Acad Sci U S A       Date:  1964-03       Impact factor: 11.205

7.  Letter: Stereochemistry and mechanism of reactions catalyzed by tryptophanase and tryptophan synthetase.

Authors:  E Schleicher; K Mascaro; R Potts; D R Mann; H B Floss
Journal:  J Am Chem Soc       Date:  1976-02-18       Impact factor: 15.419

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