Literature DB >> 27659007

Review of Geant4-DNA applications for micro and nanoscale simulations.

S Incerti1, M Douglass2, S Penfold2, S Guatelli3, E Bezak4.   

Abstract

Emerging radiotherapy treatments including targeted particle therapy, hadron therapy or radiosensitisation of cells by high-Z nanoparticles demand the theoretical determination of radiation track structure at the nanoscale. This is essential in order to evaluate radiation damage at the cellular and DNA level. Since 2007, Geant4 offers physics models to describe particle interactions in liquid water at the nanometre level through the Geant4-DNA Package. This package currently provides a complete set of models describing the event-by-event electromagnetic interactions of particles with liquid water, as well as developments for the modelling of water radiolysis. Since its release, Geant4-DNA has been adopted as an investigational tool in kV and MV external beam radiotherapy, hadron therapies using protons and heavy ions, targeted therapies and radiobiology studies. It has been benchmarked with respect to other track structure Monte Carlo codes and, where available, against reference experimental measurements. While Geant4-DNA physics models and radiolysis modelling functionalities have already been described in detail in the literature, this review paper summarises and discusses a selection of representative papers with the aim of providing an overview of a) geometrical descriptions of biological targets down to the DNA size, and b) the full spectrum of current micro- and nano-scale applications of Geant4-DNA.
Copyright © 2016 Associazione Italiana di Fisica Medica. Published by Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  Geant4-DNA; Monte Carlo method; Nanoscale simulations; Radiation

Mesh:

Substances:

Year:  2016        PMID: 27659007     DOI: 10.1016/j.ejmp.2016.09.007

Source DB:  PubMed          Journal:  Phys Med        ISSN: 1120-1797            Impact factor:   2.685


  18 in total

1.  Monte Carlo single-cell dosimetry using Geant4-DNA: the effects of cell nucleus displacement and rotation on cellular S values.

Authors:  Ramak Salim; Payvand Taherparvar
Journal:  Radiat Environ Biophys       Date:  2019-03-29       Impact factor: 1.925

2.  Dependence of gold nanoparticle radiosensitization on cell geometry.

Authors:  Wonmo Sung; Sung-Joon Ye; Aimee L McNamara; Stephen J McMahon; James Hainfeld; Jungwook Shin; Henry M Smilowitz; Harald Paganetti; Jan Schuemann
Journal:  Nanoscale       Date:  2017-05-11       Impact factor: 7.790

3.  Validation of the radiobiology toolkit TOPAS-nBio in simple DNA geometries.

Authors:  Aimee McNamara; Changran Geng; Robert Turner; Jose Ramos Mendez; Joseph Perl; Kathryn Held; Bruce Faddegon; Harald Paganetti; Jan Schuemann
Journal:  Phys Med       Date:  2016-12-22       Impact factor: 2.685

Review 4.  Radiogenomics and radiotherapy response modeling.

Authors:  Issam El Naqa; Sarah L Kerns; James Coates; Yi Luo; Corey Speers; Catharine M L West; Barry S Rosenstein; Randall K Ten Haken
Journal:  Phys Med Biol       Date:  2017-08-01       Impact factor: 3.609

Review 5.  Applications of nanodosimetry in particle therapy planning and beyond.

Authors:  Antoni Rucinski; Anna Biernacka; Reinhard Schulte
Journal:  Phys Med Biol       Date:  2021-12-10       Impact factor: 3.609

6.  Impact of DNA Geometry and Scoring on Monte Carlo Track-Structure Simulations of Initial Radiation-Induced Damage.

Authors:  Alejandro Bertolet; José Ramos-Méndez; Aimee McNamara; Dohyeon Yoo; Samuel Ingram; Nicholas Henthorn; John-William Warmenhoven; Bruce Faddegon; Michael Merchant; Stephen J McMahon; Harald Paganetti; Jan Schuemann
Journal:  Radiat Res       Date:  2022-09-01       Impact factor: 3.372

7.  Geometrical structures for radiation biology research as implemented in the TOPAS-nBio toolkit.

Authors:  Aimee L McNamara; José Ramos-Méndez; Joseph Perl; Kathryn Held; Naoki Dominguez; Eduardo Moreno; Nicholas T Henthorn; Karen J Kirkby; Sylvain Meylan; Carmen Villagrasa; Sebastien Incerti; Bruce Faddegon; Harald Paganetti; Jan Schuemann
Journal:  Phys Med Biol       Date:  2018-09-06       Impact factor: 3.609

8.  Monte Carlo simulation of chemistry following radiolysis with TOPAS-nBio.

Authors:  J Ramos-Méndez; J Perl; J Schuemann; A McNamara; H Paganetti; B Faddegon
Journal:  Phys Med Biol       Date:  2018-05-17       Impact factor: 3.609

9.  DNA double-strand breaks as a method of radiation measurements for therapeutic beams.

Authors:  Mohammad Obeidat; Kristen A McConnell; Xiaolei Li; Brian Bui; Sotirios Stathakis; Niko Papanikolaou; Karl Rasmussen; Chul Soo Ha; Sang Eun Lee; Eun Yong Shim; Neil Kirby
Journal:  Med Phys       Date:  2018-05-23       Impact factor: 4.071

10.  On the Equivalence of the Biological Effect Induced by Irradiation of Clusters of Heavy Atom Nanoparticles and Homogeneous Heavy Atom-Water Mixtures.

Authors:  Balder Villagomez-Bernabe; José Ramos-Méndez; Frederick J Currell
Journal:  Cancers (Basel)       Date:  2021-04-23       Impact factor: 6.639

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