Literature DB >> 28657906

Radiogenomics and radiotherapy response modeling.

Issam El Naqa1, Sarah L Kerns, James Coates, Yi Luo, Corey Speers, Catharine M L West, Barry S Rosenstein, Randall K Ten Haken.   

Abstract

Advances in patient-specific information and biotechnology have contributed to a new era of computational medicine. Radiogenomics has emerged as a new field that investigates the role of genetics in treatment response to radiation therapy. Radiation oncology is currently attempting to embrace these recent advances and add to its rich history by maintaining its prominent role as a quantitative leader in oncologic response modeling. Here, we provide an overview of radiogenomics starting with genotyping, data aggregation, and application of different modeling approaches based on modifying traditional radiobiological methods or application of advanced machine learning techniques. We highlight the current status and potential for this new field to reshape the landscape of outcome modeling in radiotherapy and drive future advances in computational oncology.

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Year:  2017        PMID: 28657906      PMCID: PMC5557376          DOI: 10.1088/1361-6560/aa7c55

Source DB:  PubMed          Journal:  Phys Med Biol        ISSN: 0031-9155            Impact factor:   3.609


  161 in total

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Authors: 
Journal:  Clin Pharmacol Ther       Date:  2001-03       Impact factor: 6.875

Review 2.  Preventing or reducing late side effects of radiation therapy: radiobiology meets molecular pathology.

Authors:  Søren M Bentzen
Journal:  Nat Rev Cancer       Date:  2006-09       Impact factor: 60.716

Review 3.  Review of Geant4-DNA applications for micro and nanoscale simulations.

Authors:  S Incerti; M Douglass; S Penfold; S Guatelli; E Bezak
Journal:  Phys Med       Date:  2016-09-19       Impact factor: 2.685

4.  A 2-stage genome-wide association study to identify single nucleotide polymorphisms associated with development of erectile dysfunction following radiation therapy for prostate cancer.

Authors:  Sarah L Kerns; Richard Stock; Nelson Stone; Michael Buckstein; Yongzhao Shao; Christopher Campbell; Lynda Rath; Dirk De Ruysscher; Guido Lammering; Rosetta Hixson; Jamie Cesaretti; Mitchell Terk; Harry Ostrer; Barry S Rosenstein
Journal:  Int J Radiat Oncol Biol Phys       Date:  2012-09-26       Impact factor: 7.038

5.  A radiation-induced gene expression signature as a tool to predict acute radiotherapy-induced adverse side effects.

Authors:  Claudia Mayer; Odilia Popanda; Burkhard Greve; Eberhard Fritz; Thomas Illig; Friederike Eckardt-Schupp; Maria Gomolka; Axel Benner; Peter Schmezer
Journal:  Cancer Lett       Date:  2011-01-13       Impact factor: 8.679

6.  Cellular radiosensitivity and complication risk after curative radiotherapy.

Authors:  J Peacock; A Ashton; J Bliss; C Bush; J Eady; C Jackson; R Owen; J Regan; J Yarnold
Journal:  Radiother Oncol       Date:  2000-05       Impact factor: 6.280

7.  Fitting tumor control probability models to biopsy outcome after three-dimensional conformal radiation therapy of prostate cancer: pitfalls in deducing radiobiologic parameters for tumors from clinical data.

Authors:  S Levegrün; A Jackson; M J Zelefsky; M W Skwarchuk; E S Venkatraman; W Schlegel; Z Fuks; S A Leibel; C C Ling
Journal:  Int J Radiat Oncol Biol Phys       Date:  2001-11-15       Impact factor: 7.038

Review 8.  Stereotactic ablative body radiotherapy combined with immunotherapy: present status and future perspectives.

Authors:  N H Rekers; E G C Troost; C M L Zegers; W T V Germeraad; L J Dubois; P Lambin
Journal:  Cancer Radiother       Date:  2014-08-30       Impact factor: 1.018

9.  Radiation-induced gene expression in human subcutaneous fibroblasts is predictive of radiation-induced fibrosis.

Authors:  Olaug Kristin Rødningen; Anne-Lise Børresen-Dale; Jan Alsner; Trevor Hastie; Jens Overgaard
Journal:  Radiother Oncol       Date:  2007-10-25       Impact factor: 6.280

10.  Intrinsic radiosensitivity and prediction of patient response to radiotherapy for carcinoma of the cervix.

Authors:  C M West; S E Davidson; S A Roberts; R D Hunter
Journal:  Br J Cancer       Date:  1993-10       Impact factor: 7.640

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  17 in total

1.  CT imaging markers to improve radiation toxicity prediction in prostate cancer radiotherapy by stacking regression algorithm.

Authors:  Shayan Mostafaei; Hamid Abdollahi; Shiva Kazempour Dehkordi; Isaac Shiri; Abolfazl Razzaghdoust; Seyed Hamid Zoljalali Moghaddam; Afshin Saadipoor; Fereshteh Koosha; Susan Cheraghi; Seied Rabi Mahdavi
Journal:  Radiol Med       Date:  2019-09-24       Impact factor: 3.469

2.  Provider Engagement in Radiation Oncology Data Science: Workshop Report.

Authors:  Anshu K Jain; Sanjay Aneja; Clifton D Fuller; Adam P Dicker; Caroline Chung; Erika Kim; Justin S Kirby; Harry Quon; Clara J K Lam; William C Louv; Chris Ahern; Ying Xiao; Todd R McNutt; Nadine Housri; Ronald D Ennis; John Kang; Ying Tang; Howard Higley; Michelle A Berny-Lang; Kevin A Camphausen
Journal:  JCO Clin Cancer Inform       Date:  2020-08

3.  Deep reinforcement learning for automated radiation adaptation in lung cancer.

Authors:  Huan-Hsin Tseng; Yi Luo; Sunan Cui; Jen-Tzung Chien; Randall K Ten Haken; Issam El Naqa
Journal:  Med Phys       Date:  2017-11-14       Impact factor: 4.071

Review 4.  Role of Artificial Intelligence in Radiogenomics for Cancers in the Era of Precision Medicine.

Authors:  Sanjay Saxena; Biswajit Jena; Neha Gupta; Suchismita Das; Deepaneeta Sarmah; Pallab Bhattacharya; Tanmay Nath; Sudip Paul; Mostafa M Fouda; Manudeep Kalra; Luca Saba; Gyan Pareek; Jasjit S Suri
Journal:  Cancers (Basel)       Date:  2022-06-09       Impact factor: 6.575

5.  Introduction to machine and deep learning for medical physicists.

Authors:  Sunan Cui; Huan-Hsin Tseng; Julia Pakela; Randall K Ten Haken; Issam El Naqa
Journal:  Med Phys       Date:  2020-06       Impact factor: 4.071

6.  Treatment data and technical process challenges for practical big data efforts in radiation oncology.

Authors:  C S Mayo; M Phillips; T R McNutt; J Palta; A Dekker; R C Miller; Y Xiao; J M Moran; M M Matuszak; P Gabriel; A S Ayan; J Prisciandaro; M Thor; N Dixit; R Popple; J Killoran; E Kaleba; M Kantor; D Ruan; R Kapoor; M L Kessler; T S Lawrence
Journal:  Med Phys       Date:  2018-09-18       Impact factor: 4.071

Review 7.  Genomics models in radiotherapy: From mechanistic to machine learning.

Authors:  John Kang; James T Coates; Robert L Strawderman; Barry S Rosenstein; Sarah L Kerns
Journal:  Med Phys       Date:  2020-06       Impact factor: 4.071

Review 8.  Roadmap: proton therapy physics and biology.

Authors:  Harald Paganetti; Chris Beltran; Stefan Both; Lei Dong; Jacob Flanz; Keith Furutani; Clemens Grassberger; David R Grosshans; Antje-Christin Knopf; Johannes A Langendijk; Hakan Nystrom; Katia Parodi; Bas W Raaymakers; Christian Richter; Gabriel O Sawakuchi; Marco Schippers; Simona F Shaitelman; B K Kevin Teo; Jan Unkelbach; Patrick Wohlfahrt; Tony Lomax
Journal:  Phys Med Biol       Date:  2021-02-26       Impact factor: 4.174

9.  Selection of external beam radiotherapy approaches for precise and accurate cancer treatment.

Authors:  Hiroki Shirato; Quynh-Thu Le; Keiji Kobashi; Anussara Prayongrat; Seishin Takao; Shinichi Shimizu; Amato Giaccia; Lei Xing; Kikuo Umegaki
Journal:  J Radiat Res       Date:  2018-03-01       Impact factor: 2.724

10.  Differential miRNA expression profiling reveals miR-205-3p to be a potential radiosensitizer for low- dose ionizing radiation in DLD-1 cells.

Authors:  Rodrigo Andaur; Julio C Tapia; José Moreno; Leopoldo Soto; Ricardo Armisen; Katherine Marcelain
Journal:  Oncotarget       Date:  2018-05-29
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