Literature DB >> 20627702

Structure-switching biosensors: inspired by Nature.

Alexis Vallée-Bélisle1, Kevin W Plaxco.   

Abstract

Chemosensing in nature relies on biomolecular switches, biomolecules that undergo binding-induced changes in conformation or oligomerization to transduce chemical information into specific biochemical outputs. Motivated by the impressive performance of these natural 'biosensors,' which support continuous, real-time detection in highly complex environments, significant efforts have gone into the adaptation of such switches into artificial chemical sensors. Ongoing advances in the fields of protein and nucleic acid engineering (e.g. computational protein design, directed evolution, selection strategies and labeling chemistries) have greatly enhanced our ability to design new structure-switching sensors. Coupled with the development of advanced optical readout mechanisms, including genetically encoded fluorophores, and electrochemical readouts supporting detection directly in highly complex sample matrices, switch-based sensors have already seen deployment in applications ranging from real time, in vivo imaging to the continuous monitoring of drugs in blood serum. Copyright (c) 2010 Elsevier Ltd. All rights reserved.

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Year:  2010        PMID: 20627702      PMCID: PMC3249393          DOI: 10.1016/j.sbi.2010.05.001

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   6.809


  63 in total

1.  Aptamer-based folding fluorescent sensor for cocaine.

Authors:  M N Stojanovic; P de Prada; D W Landry
Journal:  J Am Chem Soc       Date:  2001-05-30       Impact factor: 15.419

2.  Aptamer beacons for the direct detection of proteins.

Authors:  N Hamaguchi; A Ellington; M Stanton
Journal:  Anal Biochem       Date:  2001-07-15       Impact factor: 3.365

3.  Manipulation of ligand binding affinity by exploitation of conformational coupling.

Authors:  J S Marvin; H W Hellinga
Journal:  Nat Struct Biol       Date:  2001-09

4.  Design of bioelectronic interfaces by exploiting hinge-bending motions in proteins.

Authors:  D E Benson; D W Conrad; R M de Lorimier; S A Trammell; H W Hellinga
Journal:  Science       Date:  2001-08-31       Impact factor: 47.728

Review 5.  Intrinsically unstructured proteins: re-assessing the protein structure-function paradigm.

Authors:  P E Wright; H J Dyson
Journal:  J Mol Biol       Date:  1999-10-22       Impact factor: 5.469

6.  Construction of a fluorescent biosensor family.

Authors:  Robert M de Lorimier; J Jeff Smith; Mary A Dwyer; Loren L Looger; Kevin M Sali; Chad D Paavola; Shahir S Rizk; Shamil Sadigov; David W Conrad; Leslie Loew; Homme W Hellinga
Journal:  Protein Sci       Date:  2002-11       Impact factor: 6.725

7.  Efficiencies of fluorescence resonance energy transfer and contact-mediated quenching in oligonucleotide probes.

Authors:  Salvatore A E Marras; Fred Russell Kramer; Sanjay Tyagi
Journal:  Nucleic Acids Res       Date:  2002-11-01       Impact factor: 16.971

Review 8.  Engineering and design of ligand-induced conformational change in proteins.

Authors:  Laura S Mizoue; Walter J Chazin
Journal:  Curr Opin Struct Biol       Date:  2002-08       Impact factor: 6.809

9.  Visualization of maltose uptake in living yeast cells by fluorescent nanosensors.

Authors:  Marcus Fehr; Wolf B Frommer; Sylvie Lalonde
Journal:  Proc Natl Acad Sci U S A       Date:  2002-07-03       Impact factor: 11.205

10.  An electronic, aptamer-based small-molecule sensor for the rapid, label-free detection of cocaine in adulterated samples and biological fluids.

Authors:  Brian R Baker; Rebecca Y Lai; McCall S Wood; Elaine H Doctor; Alan J Heeger; Kevin W Plaxco
Journal:  J Am Chem Soc       Date:  2006-03-15       Impact factor: 15.419

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  45 in total

1.  Engineering biosensors with extended, narrowed, or arbitrarily edited dynamic range.

Authors:  Alexis Vallée-Bélisle; Francesco Ricci; Kevin W Plaxco
Journal:  J Am Chem Soc       Date:  2012-02-06       Impact factor: 15.419

2.  Designing redox potential-controlled protein switches based on mutually exclusive proteins.

Authors:  Qing Peng; Na Kong; Hui-Chuan Eileen Wang; Hongbin Li
Journal:  Protein Sci       Date:  2012-08       Impact factor: 6.725

Review 3.  Converting a protein into a switch for biosensing and functional regulation.

Authors:  Margaret M Stratton; Stewart N Loh
Journal:  Protein Sci       Date:  2011-01       Impact factor: 6.725

4.  Quantification of transcription factor binding in cell extracts using an electrochemical, structure-switching biosensor.

Authors:  Andrew J Bonham; Kuangwen Hsieh; B Scott Ferguson; Alexis Vallée-Bélisle; Francesco Ricci; H Tom Soh; Kevin W Plaxco
Journal:  J Am Chem Soc       Date:  2012-02-10       Impact factor: 15.419

5.  Transcription factor beacons for the quantitative detection of DNA binding activity.

Authors:  Alexis Vallée-Bélisle; Andrew J Bonham; Norbert O Reich; Francesco Ricci; Kevin W Plaxco
Journal:  J Am Chem Soc       Date:  2011-08-12       Impact factor: 15.419

6.  Minimalist probes for studying protein dynamics: thioamide quenching of selectively excitable fluorescent amino acids.

Authors:  Jacob M Goldberg; Lee C Speight; Mark W Fegley; E James Petersson
Journal:  J Am Chem Soc       Date:  2012-04-03       Impact factor: 15.419

7.  The interplay between effector binding and allostery in an engineered protein switch.

Authors:  Jay H Choi; Tina Xiong; Marc Ostermeier
Journal:  Protein Sci       Date:  2016-06-24       Impact factor: 6.725

8.  Thermodynamic basis for engineering high-affinity, high-specificity binding-induced DNA clamp nanoswitches.

Authors:  Andrea Idili; Kevin W Plaxco; Alexis Vallée-Bélisle; Francesco Ricci
Journal:  ACS Nano       Date:  2013-11-20       Impact factor: 15.881

Review 9.  Using Nature's "Tricks" To Rationally Tune the Binding Properties of Biomolecular Receptors.

Authors:  Francesco Ricci; Alexis Vallée-Bélisle; Anna J Simon; Alessandro Porchetta; Kevin W Plaxco
Journal:  Acc Chem Res       Date:  2016-08-26       Impact factor: 22.384

10.  Using distal-site mutations and allosteric inhibition to tune, extend, and narrow the useful dynamic range of aptamer-based sensors.

Authors:  Alessandro Porchetta; Alexis Vallée-Bélisle; Kevin W Plaxco; Francesco Ricci
Journal:  J Am Chem Soc       Date:  2012-12-13       Impact factor: 15.419

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