| Literature DB >> 27643879 |
Alvaro Velazquez-Villoria1,2, Sergio Recalde1, Jaouad Anter3, Jaione Bezunartea1, Maria Hernandez-Sanchez1, Laura García-García1, Elena Alonso1,2, Jose María Ruiz-Moreno4, Javier Araiz-Iribarren5, Patricia Fernandez-Robredo1, Alfredo García-Layana1,2.
Abstract
Choroidal neovascularization (CNV) commonly occurs in age related macular degeneration and pathological myopia patients. In this study we conducted a case-control prospective study including 431 participants. The aim of this study was to determine the potential association between 10 single nucleotide polymorphisms (SNPs) located in 4 different genetic regions (CFI, COL8A1, LIPC, and APOE), and choroidal neovascularization in age-related macular degeneration and the development of choroidal neovascularization in highly myopic eyes of a Caucasian population. Univariate and multivariate logistic regression analysis adjusted for age, sex and hypertension was performed for each allele, genotype and haplotype frequency analysis. We found that in the univariate analysis that both single-nucleotide polymorphisms in COL8A1 gene (rs13095226 and rs669676) together with age, sex and hypertension were significantly associated with myopic CNV development in Spanish patients (p<0.05). After correcting for multiple testing none of the polymorphisms studied remained significantly associated with myopic CNV (p>0.05); however, analysis of the axial length between genotypes of rs13095226 revealed an important influence of COL8A1 in the development of CNV in high myopia. Furthermore we conducted a meta-analysis of COL8A1, CFI and LIPC genes SNPs (rs669676, rs10033900 and rs10468017) and found that only rs669676 of these SNPs were associated with high myopia neovascularization.Entities:
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Year: 2016 PMID: 27643879 PMCID: PMC5028023 DOI: 10.1371/journal.pone.0162296
Source DB: PubMed Journal: PLoS One ISSN: 1932-6203 Impact factor: 3.240
Fig 1Flow chart for the selection of studies according to the criteria of this Meta-analysis.
Main characteristics of eligible studies included in the Meta-analysis.
| First Author | Year | mCNVn | Controlsn | Region | Ethnicity | Genotyping Method | Matching |
|---|---|---|---|---|---|---|---|
| Leveziel et al. [ | 2012 | 71 | 196 | France/USA | Caucasian | ABI | Sex and Ethnicity |
| Miyake et al.[ | 2013 | 478 | 557 | Japan | Asian | ABI | Age, sex, and axial length |
| Velazquez Villoria et al. | 2016 | 147 | 103 | Spain | Caucasian | TaqMan | Age,sex and ethnicity |
Characteristics of the study population.
| High myopia | P-value | control group | P-value | ||
|---|---|---|---|---|---|
| mCNV | HMnoCNV | No CNVNo HM-AMD | |||
| Number of patients | 147 | 103 | 181 | ||
| Age (Mean ± SD) | 60.68 (±14.07) | 58.58 (±13.85) | ns | 73.39 (±5.31) | |
| Female Gender % | 67.35% | 69.90% | ns | 53.59% | |
| Axial Lenght (mm ± SD) | 30.74 (±2.60) | 29.81 (±2.61) | ns | 23.46 (±0.49) | |
| Refractive power (Diopters ± SD) | -13.30D (±4.25D) | -12.84 (±4.21D) | ns | -1.77 (±0.93D) | |
| Tobacco smokers | 31.29% | 27.22% | ns | 23.76% | ns |
| Hypertension % | 29.25% | 23.33% | ns | 46.96% | |
CNV, Choroidal Neovascularization; NA, not available; SD, Standard deviation.
1) P-value comparing HM-CNV+ with HM-CNV-
2) P-value comparing HM-CNV+ with Population based control group.
Significance:
ns p > 0.05;
* p < 0.05;
** p < 0.01;
***p < 0.001.
Comparison of the genotype frequencies between mCNV and HMnoCNV group.
| SNPs | Gene | Chr | Genotype | HM mCNV Genotype freq (%) | MAF | HMnoCNV Genotype freq (%) | MAF | Allele | Allele OR (95% CI) | Allele | Genetic model Co/Do/Re/Ov | Gen | Genotype OR (95% CI) | Gen |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Chr4 | 24.1/48.1/27.8 | 0.48 | 32.6/44.2/23.3 | 0.55 | 0.20 | 0.8 (0.5–1.1) | - | Do | 0.13 | 1.66 (0.87–3.18) | ||||
| Chr4 | 28.8/44.6/26.6 | 0.49 | 21.1/48.9/30.0 | 0.54 | 0.25 | 0.8 (0.5–1.1) | - | Re | 0.13 | 1.66 (0.85–3.23) | ||||
| Chr4 | 35.2/46.0/18.7 | 0.42 | 41.1/45.6/13.3 | 0.36 | 0.24 | 1.3 (0.7–2.2) | - | Re | 0.26 | 1.57 (0.71–3.48) | ||||
| Chr4 | 90.7/8.5/0.8 | 0.05 | 86.5/12.4/1.1 | 0.07 | 0.41 | 0.7 (0.3–2.2) | - | Do | 0.47 | 0.72 (0.30–1.76) | ||||
| Chr4 | 29.3/47.4/23.3 | 0.47 | 23.5/44.7/31.8 | 0.54 | 0.17 | 0.7 (0.5–1.3) | - | Re | 0.12 | 0.60 (0.31–1.15) | ||||
| Chr4 | 28.6/45.1/26.3 | 0.49 | 22.4/45.9/31.7 | 0.55 | 0.24 | 0.8 (0.5–1.1) | - | Re | 0.19 | 1.56 (0.80–3.05) | ||||
| Chr3 | 77.8/17.0/5.2 | 0.14 | 85.6/14.4/0.0 | 0.07 | 0.034 | 2.0 (1.1–3.9) | 0.30 | Re | 0.0097 | NA (0.00-NA) | 0.08 | |||
| Chr3 | 35.5/40.3/24.2 | 0.44 | 30.4/54.4/14.2 | 0.41 | 0.69 | 1.1 (0.7–1.9) | - | Ov | 0.15 | 0.66 (0.37–1.17) | ||||
| Chr15 | 46.6/42.1/11.3 | 0.32 | 49.4/40.2/10.3 | 0.30 | 0.75 | 1.1 (0.6–2.0) | - | Co | 1 | 1.01 (0.37–2.73) | ||||
| Chr19 | 100.0/0.0/0.0 | - | 100.0/0.0/0.0 | - | - | NA | - | - | - |
Chr: Chromosome; Genotype freq: Genotype frequency; MAF: minor allele frequency, OR: Odds ratio; CI: Confidence interval; Co: Codominat; Do: Dominant; Re: Recessive; Ov: Overdominant;
*Uncorrected P-value: value from logistic regression model; P value significance < 0.05;
**P-value corrected for multiple testing using Bonferroni method.
***rs769455 was excluded from the analysis because it was monomorphic SNP.
Comparison of the genotype frequencies between mCNV and population based control group.
| SNPs | HM mCNV Genotype freq (%) | MAF | control group Genotype freq (%) | MAF | Allele | Allele OR (95% CI) | Allele | Genetic model Co/Do/Re/Ov | Gen | Gen OR (95% CI) | Gen |
|---|---|---|---|---|---|---|---|---|---|---|---|
| 24.1/48.1/27.8 | 0.48 | 24.7/51.7/23.6 | 0.50 | 0.78 | 0.9 (0.6–1.3) | Re | 0.41 | 1.34 (0.66–2.71) | - | ||
| 28.8/44.6/26.6 | 0.49 | 22.7/58.0/19.3 | 0.48 | 0.53 | 1.0 (0.6–1.8) | Re | 0.072 | 1.92 (0.94–3.91) | - | ||
| 35.2/46.0/18.7 | 0.42 | 30.2/52.1/17.6 | 0.43 | 0.65 | 0.9 (0.5–1.6) | Ov | 0.25 | 0.70 (0.38–1.29) | - | ||
| 90.7/8.5/0.8 | 0.05 | 88.2/11.8/0.0 | 0.06 | 0.70 | 0.8 (0.4–2.0) | Do | 0.12 | 0.43 (0.14–1.26) | - | ||
| 29.3/47.4/23.3 | 0.47 | 24.1/50.9/25.0 | 0.50 | 0.47 | 0.9 (0.6–1.3) | Co | 0.79 | 1.32 (0.56–3.11) | - | ||
| 28.6/45.1/26.3 | 0.49 | 24.1/57.8/18.1 | 0.47 | 0.37 | 1.1 (0.7–1.6) | Co | 0.13 | 2.06 (0.84–5.03) | - | ||
| 77.8/17.0/5.2 | 0.14 | 86.7/13.3/0.0 | 0.07 | 0.016 | 2.2 (1.2–4.2) | 0.14 | Re | 0.0096 | NA (0.00-NA) | 0.08 | |
| 35.5/40.3/24.2 | 0.44 | 34.9/48.6/16.5 | 0.41 | 0.25 | 1.1 (0.8–1.7) | Re | 0.023 | 2.48 (1.12–5.43) | 0.20 | ||
| 46.6/42.1/11.3 | 0.32 | 50.6/33.1/16.3 | 0.33 | 0.93 | 0.9 (0.6–1.4) | Ov | 0.063 | 1.15 (0.65–2.05) | - | ||
| 100/0.0/0.0 | - | 100/0.0/0.0 | - | SD | - | - | Co | 0.68 | 1.45 (0.61–3.44) | - |
Genotype freq: Genotype frequency; MAF: minor allele frequency, OR: Odds ratio; CI: Confidence interval; Co: Codominat; Do: Dominant; Re: Recessive; Ov: Overdominant;
*Uncorrected P-value: value from logistic regression model; P value significance < 0.05;
**P-value corrected for multiple testing using Bonferroni method.
***rs769455 was excluded from the analysis because it was monomorphic SNP.
Multivariable logistic regression analysis between mCNV and HMnoCNV.
| B | Sig. | OR | 95% CI | ||
|---|---|---|---|---|---|
| Lower | Upper | ||||
| mCNV vs HM No CNV | |||||
| Tobacco (1) | 0.848 | 0.006 | 2.33 | 1.27 | 4.28 |
| Age | -0.558 | 0.096 | .57 | .29 | 1.10 |
Reference: Good response.
B: multivariate logistic regression value, Sig: P-value significance (< 0.05), OR: Odds Ratio, CI 95%: 95% confidence interval.
Fig 2Axial length and refractive error of Col8A1 gene SNPs (rs13095226 and rs669676) genotypes.
(A-B) Axial length showed statistically significant differences between CC/CT vs TT genotypes of rs13095226, whereas no differences were found for Refractive error. (C-D) Axial length and Refractive error (respectively) did not show differences between GG/GA vs AA genotypes of rs669676.
Haplotype analyses of LD blocks in the CFI gene.
| SNPs | Haplotype | Freq mCNV | Freq HMnoCNV | P-Value | OR |
|---|---|---|---|---|---|
| rs11728699/rs6854876/rs7439493/rs13117504 | 0.444 | 0.507 | 1.00 | ||
| 0.484 | 0.424 | 0.17 | 1.32 (0.89–1.97) | ||
| 0.045 | 0.029 | 0.46 | 1.55 (0.48–5.01) | ||
| 0.027 | 0.029 | 0.77 | 0.70 (0.05–9.05) | ||
| rs10033900/rs11726949 | 0.568 | 0.614 | 1.00 | ||
| 0.356 | 0.382 | 0.35 | 1.22 (0.81–1.85) | ||
| 0.045 | 0.035 | 0.8 | 0.86 (0.27–2.72) | ||
| 0.015 | 0.024 | 0.78 | 0.79 (0.16–4.02) | ||
| rs13117504/rs10033900 | 0.4412 | 0.501 | 1 | ||
| 0.370 | 0.331 | 0.32 | 1.25 (0.81–1.92) | ||
| 0.139 | 0.137 | 0.49 | 1.23 (0.68–2.22) | ||
| 0.049 | 0.031 | 0.72 | 1.23 (0.39–3.90) |
Freq mCNV: Frequency of Myopic Choroidal Neovascularization, Freq HMnoCNV: Frequency of High Myopic eyes without Choroidal Neovascularization, P-value significance (<0.05), OR: Odds Ratio
Fig 3Forest plots of the association of polymorphisms and susceptibility to mCNV.
A) Impact of rs669676 in mCNV. B) Impact of rs10033900. C) Impact of rs10468017.