Literature DB >> 17273809

Systematic assessment of the tagging polymorphisms of the COL1A1 gene for high myopia.

Chung-Ling Liang1,2, Kuo-Sheng Hung3, Yueh-Ying Tsai4, Wansu Chang4, Hsin-Shih Wang2, Suh-Hang Hank Juo5,6,7.   

Abstract

Reduced scleral collagen accumulation has been found in the development of myopia. Single nucleotide polymorphisms (SNPs) at the type I collagen alpha-1 gene (COL1A1) may cause different susceptibilities to myopia. We conducted a case-control study to systematically examine COL1A1 as a candidate gene for high myopia. A case was defined as spherical refraction <or=-6 D and control >or=-1.5 D. The study comprised 471 cases and 623 controls, and ten tagging SNPs were genotyped. None of the SNPs reached the significant level of 0.05. Subset analysis on cases with a strong family history did not demonstrate significant results. We could not find an interaction between gene and near work. Exploratory analyses by changing the cutoff values to re-define cases and controls did not improve the results. Haplotype analysis did not yield significant association with myopia. This study failed to demonstrate COL1A1 as a significant risk factor for high myopia.

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Year:  2007        PMID: 17273809     DOI: 10.1007/s10038-007-0117-6

Source DB:  PubMed          Journal:  J Hum Genet        ISSN: 1434-5161            Impact factor:   3.172


  13 in total

1.  Haploview: analysis and visualization of LD and haplotype maps.

Authors:  J C Barrett; B Fry; J Maller; M J Daly
Journal:  Bioinformatics       Date:  2004-08-05       Impact factor: 6.937

2.  A haplotype map of the human genome.

Authors: 
Journal:  Nature       Date:  2005-10-27       Impact factor: 49.962

3.  Regression-based association analysis with clustered haplotypes through use of genotypes.

Authors:  Jung-Ying Tzeng; Chih-Hao Wang; Jau-Tsuen Kao; Chuhsing Kate Hsiao
Journal:  Am J Hum Genet       Date:  2005-12-19       Impact factor: 11.025

4.  Parental myopia, near work, school achievement, and children's refractive error.

Authors:  Donald O Mutti; G Lynn Mitchell; Melvin L Moeschberger; Lisa A Jones; Karla Zadnik
Journal:  Invest Ophthalmol Vis Sci       Date:  2002-12       Impact factor: 4.799

5.  New locus for autosomal dominant high myopia maps to the long arm of chromosome 17.

Authors:  Prasuna Paluru; Shawn M Ronan; Elise Heon; Marcella Devoto; Scott C Wildenberg; Genaro Scavello; Ann Holleschau; Outi Mäkitie; William G Cole; Richard A King; Terri L Young
Journal:  Invest Ophthalmol Vis Sci       Date:  2003-05       Impact factor: 4.799

6.  Epidemiologic study of the prevalence and severity of myopia among schoolchildren in Taiwan in 2000.

Authors:  L L Lin; Y F Shih; C K Hsiao; C J Chen; L A Lee; P T Hung
Journal:  J Formos Med Assoc       Date:  2001-10       Impact factor: 3.282

7.  Collagen gene expression and the altered accumulation of scleral collagen during the development of high myopia.

Authors:  Alex Gentle; Yanyan Liu; Jennifer E Martin; Giada L Conti; Neville A McBrien
Journal:  J Biol Chem       Date:  2003-02-26       Impact factor: 5.157

8.  Impact of family history of high myopia on level and onset of myopia.

Authors:  Chung-Ling Liang; Eugene Yen; Jui-Yung Su; Chang Liu; Tzu-Yi Chang; Naeun Park; Ming-Jin Wu; Sharon Lee; John T Flynn; Suh-Hang Hank Juo
Journal:  Invest Ophthalmol Vis Sci       Date:  2004-10       Impact factor: 4.799

9.  Polymorphisms of four bone mineral density candidate genes in Chinese populations and comparison with other populations of different ethnicity.

Authors:  Shu-Feng Lei; Fei-Yan Deng; Xiang-Hua Liu; Qi-Ren Huang; Yuejuan Qin; Qi Zhou; De-Ke Jiang; Yu-Mei Li; Xiao-Yang Mo; Man-Yuan Liu; Xiang-Ding Chen; Xiu-Shan Wu; Hui Shen; Volodymyr Dvornyk; Langjuan Zhao; Robert R Recker; Hong-Wen Deng
Journal:  J Bone Miner Metab       Date:  2003       Impact factor: 2.626

10.  Reduced extracellular matrix in mammalian sclera with induced myopia.

Authors:  T T Norton; J A Rada
Journal:  Vision Res       Date:  1995-05       Impact factor: 1.886

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  17 in total

1.  Association of COL1A1 polymorphism with high myopia: a Meta-analysis.

Authors:  Guang-Ming Jin; Xiao-Jing Zhao; Ai-Ming Chen; Yong-Xing Chen; Qin Li
Journal:  Int J Ophthalmol       Date:  2016-04-18       Impact factor: 1.779

2.  Genetic association of COL1A1 polymorphisms with high myopia in Asian population: a Meta-analysis.

Authors:  Bo Gong; Chao Qu; Xiao-Fang Huang; Zi-Meng Ye; Ding-Ding Zhang; Yi Shi; Rong Chen; Yu-Ping Liu; Ping Shuai
Journal:  Int J Ophthalmol       Date:  2016-08-18       Impact factor: 1.779

3.  Association between COL1A1 polymorphisms and high myopia: a meta-analysis.

Authors:  Xiaoyu Zhang; Xingtao Zhou; Xinhua Qu
Journal:  Int J Clin Exp Med       Date:  2015-04-15

4.  COL1A1 and COL2A1 genes and myopia susceptibility: evidence of association and suggestive linkage to the COL2A1 locus.

Authors:  Ravikanth Metlapally; Yi-Ju Li; Khanh-Nhat Tran-Viet; Diana Abbott; Gregory R Czaja; Francois Malecaze; Patrick Calvas; David Mackey; Thomas Rosenberg; Sandrine Paget; Tetyana Zayats; Michael J Owen; Jeremy A Guggenheim; Terri L Young
Journal:  Invest Ophthalmol Vis Sci       Date:  2009-04-22       Impact factor: 4.799

5.  The FGF2 gene in a myopia animal model and human subjects.

Authors:  Jianhong An; Edward Hsi; Xiangtian Zhou; Yijin Tao; Suh-Hang Hank Juo; Chung-Ling Liang
Journal:  Mol Vis       Date:  2012-02-16       Impact factor: 2.367

6.  An association study of the COL1A1 gene and high myopia in a Han Chinese population.

Authors:  Dingding Zhang; Yi Shi; Bo Gong; Fei He; Fang Lu; He Lin; Zhengzheng Wu; Jing Cheng; Bin Chen; Shihuang Liao; Shi Ma; Jianbin Hu; Zhenglin Yang
Journal:  Mol Vis       Date:  2011-12-24       Impact factor: 2.367

7.  Myocilin polymorphisms and high myopia in subjects of European origin.

Authors:  Tetyana Zayats; Tammy Yanovitch; Rosalind C Creer; George McMahon; Yi-Ju Li; Terri L Young; Jeremy A Guggenheim
Journal:  Mol Vis       Date:  2009-01-26       Impact factor: 2.367

8.  Sequence variations of GRM6 in patients with high myopia.

Authors:  Xiaoyu Xu; Shiqiang Li; Xueshan Xiao; Panfeng Wang; Xiangming Guo; Qingjiong Zhang
Journal:  Mol Vis       Date:  2009-10-19       Impact factor: 2.367

9.  Assessment of the association of matrix metalloproteinases with myopia, refractive error and ocular biometric measures in an Australian cohort.

Authors:  Maria Schache; Paul N Baird
Journal:  PLoS One       Date:  2012-10-15       Impact factor: 3.240

10.  Novel PAX9 and COL1A2 missense mutations causing tooth agenesis and OI/DGI without skeletal abnormalities.

Authors:  Shih-Kai Wang; Hui-Chen Chan; Igor Makovey; James P Simmer; Jan C-C Hu
Journal:  PLoS One       Date:  2012-12-05       Impact factor: 3.240

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