Literature DB >> 19387081

COL1A1 and COL2A1 genes and myopia susceptibility: evidence of association and suggestive linkage to the COL2A1 locus.

Ravikanth Metlapally1, Yi-Ju Li, Khanh-Nhat Tran-Viet, Diana Abbott, Gregory R Czaja, Francois Malecaze, Patrick Calvas, David Mackey, Thomas Rosenberg, Sandrine Paget, Tetyana Zayats, Michael J Owen, Jeremy A Guggenheim, Terri L Young.   

Abstract

PURPOSE: Collagen involvement in myopia development via scleral remodeling is well-known. Recently, COL1A1 and COL2A1 gene polymorphisms were reported to be associated with high-grade and common myopia, respectively. This study was conducted to investigate whether these collagen genes are associated and/or genetically linked with myopia in large Caucasian family datasets.
METHODS: High-grade myopia was defined as <or=-5.00 D. Two independent datasets comprising 146 (Duke) and 130 (Cardiff) families with high-grade myopia participated in the association study. Allelic discrimination assays were performed on tagging SNPs for COL1A1 and COL2A1. The pedigree disequilibrium test (PDT) and the association test in the presence of linkage (APL) were used for association analyses. Linkage analyses for COL2A1 locus markers were performed with the Fastlink and Merlin programs in conjunction with data obtained from our collaborative whole-genome linkage study (254 families).
RESULTS: Significant association was identified between five SNPs (rs1034762, rs1635529, rs1793933, rs3803183, and rs17122571) of the COL2A1 locus and high-grade myopia (P < 0.045, minimum (min) P = 0.008) and with myopia status set at <or=-0.50 or -0.75 D (min P = 0.004) in the Duke dataset. The SNP rs1635529 also showed significant association in the Cardiff dataset (<or=-5.00 D, min P = 0.004; <or=-0.50 D, min P = 0.007). Linkage analyses showed suggestive linkage to the COL2A1 locus on 12q. No association was found between COL1A1 SNPs and any degree of myopia.
CONCLUSIONS: The COL2A1 gene was associated with high-grade myopia in two independent Caucasian family datasets. COL1A1 gene polymorphisms were not associated with myopia in our dataset, indicating possible heterogeneity across different ethnicities.

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Year:  2009        PMID: 19387081      PMCID: PMC3936411          DOI: 10.1167/iovs.08-3346

Source DB:  PubMed          Journal:  Invest Ophthalmol Vis Sci        ISSN: 0146-0404            Impact factor:   4.799


  28 in total

1.  A test for linkage and association in general pedigrees: the pedigree disequilibrium test.

Authors:  E R Martin; S A Monks; L L Warren; N L Kaplan
Journal:  Am J Hum Genet       Date:  2000-05-23       Impact factor: 11.025

2.  Accounting for linkage in family-based tests of association with missing parental genotypes.

Authors:  Eden R Martin; Meredyth P Bass; Elizabeth R Hauser; Norman L Kaplan
Journal:  Am J Hum Genet       Date:  2003-10-09       Impact factor: 11.025

3.  New locus for autosomal dominant high myopia maps to the long arm of chromosome 17.

Authors:  Prasuna Paluru; Shawn M Ronan; Elise Heon; Marcella Devoto; Scott C Wildenberg; Genaro Scavello; Ann Holleschau; Outi Mäkitie; William G Cole; Richard A King; Terri L Young
Journal:  Invest Ophthalmol Vis Sci       Date:  2003-05       Impact factor: 4.799

4.  Collagen gene expression and the altered accumulation of scleral collagen during the development of high myopia.

Authors:  Alex Gentle; Yanyan Liu; Jennifer E Martin; Giada L Conti; Neville A McBrien
Journal:  J Biol Chem       Date:  2003-02-26       Impact factor: 5.157

Review 5.  Role of the sclera in the development and pathological complications of myopia.

Authors:  Neville A McBrien; Alex Gentle
Journal:  Prog Retin Eye Res       Date:  2003-05       Impact factor: 21.198

6.  Autosomal dominant rhegmatogenous retinal detachment associated with an Arg453Ter mutation in the COL2A1 gene.

Authors:  Sioe Lie Go; Alessandra Maugeri; Jef J S Mulder; Marc A van Driel; Frans P M Cremers; Carel B Hoyng
Journal:  Invest Ophthalmol Vis Sci       Date:  2003-09       Impact factor: 4.799

7.  An international collaborative family-based whole-genome linkage scan for high-grade myopia.

Authors:  Yi-Ju Li; Jeremy A Guggenheim; Anuradha Bulusu; Ravikanth Metlapally; Diana Abbott; Francois Malecaze; Patrick Calvas; Thomas Rosenberg; Sandrine Paget; Rosalind C Creer; George Kirov; Michael J Owen; Bei Zhao; Tristan White; David A Mackey; Terri L Young
Journal:  Invest Ophthalmol Vis Sci       Date:  2009-03-25       Impact factor: 4.799

8.  Microarray analysis of gene expression in human donor sclera.

Authors:  Terri L Young; Genaro S Scavello; Prasuna C Paluru; Jonathan D Choi; Eric F Rappaport; Jody A Rada
Journal:  Mol Vis       Date:  2004-03-22       Impact factor: 2.367

9.  Linkage analysis of the genetic loci for high myopia on 18p, 12q, and 17q in 51 U.K. families.

Authors:  Jane E Farbrother; George Kirov; Michael J Owen; Ricardo Pong-Wong; Chris S Haley; Jeremy A Guggenheim
Journal:  Invest Ophthalmol Vis Sci       Date:  2004-09       Impact factor: 4.799

Review 10.  The Stickler syndrome: genotype/phenotype correlation in 10 families with Stickler syndrome resulting from seven mutations in the type II collagen gene locus COL2A1.

Authors:  Ruth M Liberfarb; Howard P Levy; Peter S Rose; Douglas J Wilkin; Joie Davis; Joan Z Balog; Andrew J Griffith; Yvonne M Szymko-Bennett; Jennifer J Johnston; Clair A Francomano; Ekaterina Tsilou; Benhamin I Rubin
Journal:  Genet Med       Date:  2003 Jan-Feb       Impact factor: 8.822

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  24 in total

1.  Wound healing genes and susceptibility to cutaneous leishmaniasis in Brazil: role of COL1A1.

Authors:  Lucas Almeida; Joyce Oliveira; Luiz Henrique Guimarães; Edgar M Carvalho; Jenefer M Blackwell; Léa Castellucci
Journal:  Infect Genet Evol       Date:  2015-01-03       Impact factor: 3.342

2.  Genetic association of COL1A1 polymorphisms with high myopia in Asian population: a Meta-analysis.

Authors:  Bo Gong; Chao Qu; Xiao-Fang Huang; Zi-Meng Ye; Ding-Ding Zhang; Yi Shi; Rong Chen; Yu-Ping Liu; Ping Shuai
Journal:  Int J Ophthalmol       Date:  2016-08-18       Impact factor: 1.779

3.  Vitamin D receptor (VDR) and group-specific component (GC, vitamin D-binding protein) polymorphisms in myopia.

Authors:  Donald O Mutti; Margaret E Cooper; Ecaterina Dragan; Lisa A Jones-Jordan; Melissa D Bailey; Mary L Marazita; Jeffrey C Murray; Karla Zadnik
Journal:  Invest Ophthalmol Vis Sci       Date:  2011-06-01       Impact factor: 4.799

4.  Association between COL1A1 polymorphisms and high myopia: a meta-analysis.

Authors:  Xiaoyu Zhang; Xingtao Zhou; Xinhua Qu
Journal:  Int J Clin Exp Med       Date:  2015-04-15

5.  Genome-wide scans of myopia in Pennsylvania Amish families reveal significant linkage to 12q15, 8q21.3 and 5p15.33.

Authors:  Anthony M Musolf; Claire L Simpson; Theresa A Alexander; Laura Portas; Federico Murgia; Elise B Ciner; Dwight Stambolian; Joan E Bailey-Wilson
Journal:  Hum Genet       Date:  2019-03-02       Impact factor: 4.132

Review 6.  Nature and nurture: the complex genetics of myopia and refractive error.

Authors:  R Wojciechowski
Journal:  Clin Genet       Date:  2010-12-13       Impact factor: 4.438

7.  Relationships between COL2A1 gene polymorphisms and knee osteoarthritis in Han Chinese women.

Authors:  Peng Xu; Jianfeng Yao; Weikun Hou
Journal:  Mol Biol Rep       Date:  2010-11-19       Impact factor: 2.316

8.  Genetic factors for choroidal neovascularization associated with high myopia.

Authors:  Nicolas Leveziel; Yi Yu; Robyn Reynolds; Albert Tai; Weihua Meng; Violaine Caillaux; Patrick Calvas; Bernard Rosner; François Malecaze; Eric H Souied; Johanna M Seddon
Journal:  Invest Ophthalmol Vis Sci       Date:  2012-07-27       Impact factor: 4.799

Review 9.  IMI - Myopia Genetics Report.

Authors:  Milly S Tedja; Annechien E G Haarman; Magda A Meester-Smoor; Jaakko Kaprio; David A Mackey; Jeremy A Guggenheim; Christopher J Hammond; Virginie J M Verhoeven; Caroline C W Klaver
Journal:  Invest Ophthalmol Vis Sci       Date:  2019-02-28       Impact factor: 4.799

10.  Sequence variations of GRM6 in patients with high myopia.

Authors:  Xiaoyu Xu; Shiqiang Li; Xueshan Xiao; Panfeng Wang; Xiangming Guo; Qingjiong Zhang
Journal:  Mol Vis       Date:  2009-10-19       Impact factor: 2.367

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