| Literature DB >> 32730261 |
Valentina Bilbao-Malavé1,2, Sergio Recalde1,2,3,4, Jaione Bezunartea1,2,3, Maria Hernandez-Sanchez1,2,3,4, Jorge González-Zamora1,2, Leyre Maestre-Rellan1, José María Ruiz-Moreno4,5,6,7, Javier Araiz-Iribarren5,8,9, Luis Arias4,10, Jorge Ruiz-Medrano6, Ignacio Flores-Moreno4,6, Sara Llorente-González4,11, Guillermo Fernández-Sanz4,11, Clara Berrozpe-Villabona4,11, Alvaro Velazquez-Villoria12, Ester Carreño13, Patricia Fernandez-Robredo1,2,3,4, Alfredo Garcia-Layana1,2,3,4.
Abstract
High myopia and the subsequent degenerative changes of the retina, choroid, and sclera, known as myopic maculopathy (MM), are a serious visual problem in many Asian countries, and are beginning to be so in the south of Europe, especially in the Mediterranean. It is therefore necessary to carry out genetic and environmental studies to determine the possible causes of this disease. This study aims to verify if the genetic factors that have been most related to Asian populations are also associated in two Spanish cohorts. Eight SNPs from six genes (PAX6, SCO2, CCDC102B, BLID, chromosome 15q14, and COL8A1) along with demographic, ophthalmic and environmental factors were analysed in two cohorts from a total of 365 highly myopic subjects and 177 control subjects. The genetic analysis showed that COL8A1 SNP rs13095226 was associated with the development of choroidal neovascularization (CNV) and also seems to play an important role in the increase of axial length. The SNP rs634990 of chromosome 15q14 also showed a significant association with MM, although this was lost after the Bonferroni correction. Additional demographic and environmental factors, namely age, sex, smoking status, and pregnancy history, were also found to be associated with MM and CNV in this population.Entities:
Mesh:
Year: 2020 PMID: 32730261 PMCID: PMC7392267 DOI: 10.1371/journal.pone.0236071
Source DB: PubMed Journal: PLoS One ISSN: 1932-6203 Impact factor: 3.240
Demographic characteristics of the study population, including cohort 1 and 2 from the HM and control groups.
| High Myopia (HM) | Control Group | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| HM with Myopic Maculopathy | HM without Myopic Maculopathy | p-value 1 | HM with CNV | HM without CNV | p-value 2 | No HM | p-value 3 | ||||||||||||||||
| Cohort1 | Cohort 2 | p-value | Total | Cohort 1 | Cohort 2 | p-value | Total | Cohort 1 | Cohort 2 | p-value | Total | Cohort 1 | Cohort 2 | p-value | Total | Cohort 1 | Cohort 2 | p-value | Total | ||||
| Number of Patients | 176 | 103 | 55 | 31 | 98 | 79 | 133 | 55 | 124 | 53 | |||||||||||||
| Age (Mean ± SD) | 66.65±12.4 | 57.6 ±14.3 | 0.08 | 57.60 ±9.1 | 53.16 ±12.4 | 0.05 | 67.98 ±13.0 | 60.2 ±13.3 | 61.89 ±11.1 | 53.15 ±11.8 | 76.60 ±14.8 | 71.15 ±13.7 | 0.120 | ||||||||||
| Female Gender (%) | 118 (67.0) | 67 (65.0) | 0.880 | 30 (54.4) | 17 (54.8) | 0.990 | 0.0547 | 68 (69.4) | 49 (62.0) | 0.33 | 79 (59.4) | 36 (65.4) | 0.530 | 0.3310 | 65 (52.4) | 32 (59.4) | 0.410 | ||||||
| Refractive Error (Diopters ± SD) | -13.80 ±4.69 | -14.09 ±4.69 | 0.345 | -10.20 ±3.25 | -9.22 ±2.40 | 0.220 | -14.15 ±4.99 | -13.42 ±4.10 | 0.340 | -12.12 ±4.19 | -12.22 ±4.47 | 0.695 | -1.61 ±0.94 | -1.82 ±0.90 | 0.780 | ||||||||
| Axial Length (mm ± SD) | 30.63±2.61 | 30.3 ±2.40 | 0.855 | 27.80 ±1.99 | 27.20 ±1.89 | 0.440 | 30.06 ±2.51 | 30.4 ±2.62 | 0.780 | 29.70 ±2.84 | 29.20 ±2.24 | 0.690 | 23.65 ±0.56 | 23.20 ±0.42 | 0.560 | ||||||||
| Tobacco Smokers (%) | 69 (39.2) | 31 (32.6) | 0.315 | 31 (56.3) | 10 (37.8) | 0.150 | 35 (35.7) | 24 (32.0) | 0.630 | 64 (48.1) | 17 (36.1) | 0.190 | 29 (23.3) | 14 (26.4) | 0.320 | ||||||||
| Hypertension (%) | 56 (31.8) | 32 (33.6) | 0.690 | 16 (29.1) | 4 (14.8) | 0.180 | 0.2203 | 33 (33.7) | 27 (36.0) | 0.870 | 39 (29.3) | 9 (19.1) | 0.200 | 0.3320 | 62 (50.0) | 23 (43.4) | 0.210 | ||||||
| Hypercholesterolemia (%) | 57 (32.3) | 21 (22.6) | 0.11 | 21 (38.2) | 4 (14.8) | 0.7790 | 38 (38.8) | 17 (23.2) | 40 (30.0) | 8 (17.0) | 0.190 | 0.2240 | 42 (33.8) | 16 (30.1) | 0.880 | 0.6930 | |||||||
HM: High myopia; CNV: Choroidal neovascularization; SD: Standard deviation.
1) P-value comparing HM-No MM with HM-MM.
2) P-value comparing HM-CNV+ with HM-No CNV
3) P-value comparing HM with Control group
Significance p < 0.05
Fig 1Axial length and refractive error.
In the groups with MM (A) and CNV (B), the axial length was significantly increased compared to the groups without MM (A) and without CNV (B). Analysis of refractive error showed that subjects with MM (C) and CNV (D) had a significantly higher degree of myopia than subjects without MM (C) and without CNV (D).
Fig 2Smoking habit and history of pregnancy.
A significantly higher number of non-smokers individuals were found in the MM (A) and CNV groups (B) compared to the groups without MM (A) and without CNV (B). A significantly greater number of woman who had been pregnant at least once were found in the MM group compared to the group without MM (C), but no statistically significant differences were found when comparing the groups with and without CNV (D).
Fig 3Outdoor activities and near work in childhood.
We calculate the mean number of hours spent doing outdoor activities and near work during childhood, and analyse the proportion of subjects that were above and below that number. No statistically significant differences were found when comparing the groups with and without MM and with and without CNV (A-D).
Table of Minor Allele Frequencies (MAF) in different study groups.
| High Myopia (HM) | Control Group | |||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| HM with Myopic Maculopathy | HM without Myopic Maculopathy | p-value 1 | HM with CNV | HM without CNV | p-value 2 | No HM | p-value 3 | HW Equili. | ||||||||||||||
| Minor Allele | MAF Cohort1 | MAF Cohort 2 | MAF Total | MAF Cohort 1 | MAF Cohort 2 | MAF Total | MAF Cohort 1 | MAF Cohort 2 | MAF Total | MAF Cohort 1 | MAF Cohort 2 | MAF Total | MAF HM | MAF Cohort 1 | MAF Cohort 2 | MAF Total | ||||||
| C | 0.03 | 0.03 | 0.04 | 0.0 | 0.04 | 0.02 | 0.03 | 0.04 | 0.04 | 0.03 | 0.33 | |||||||||||
| G | 0.46 | 0.44 | 0.39 | 0.48 | 0.47 | 0.44 | 0.42 | 0.46 | 0.42 | 0.56 | 0.44 | |||||||||||
| G | 0.53 | 0.54 | 0.43 | 0.52 | 0.54 | 0.46 | 0.49 | 0.46 | 0.42 | 0.17 | ||||||||||||
| C | 0.10 | 0.16 | 0.05 | 0.12 | 0.11 | 0.18 | 0.08 | 0.11 | 0.08 | 0.19 | ||||||||||||
| A | 0.04 | 0.05 | 0.05 | 0.06 | 0.04 | 0.04 | 0.04 | 0.07 | 0.07 | 0.58 | ||||||||||||
| T | 0.47 | 0.44 | 0.41 | 0.32 | 0.48 | 0.43 | 0.44 | 0.39 | 0.47 | 0.60 | 0.13 | |||||||||||
| T | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | - | |||||||||||
| G | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | - | ||||||||||||
HM: High myopia; CNV: Choroidal neovascularization; SD: Standard deviation.
1) P-value comparing HM-No MM with HM-MM.
2) P-value comparing HM-CNV+ with HM-No CNV
3) P-value comparing HM with Control group
Significance p < 0.05
Comparison of the genotype frequencies between the HM vs. No HM group.
| Cohort 1 | Cohort 2 | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| SNPs | Genotype | Control Genotype frec (%) Genotype cases (n) | HM Genotype frec (%) Genotype cases (n) | Genot. Uncor. p-value | Control Genotype frec (%) Genotype cases (n) | HM Genotype frec (%) Genotype cases (n) | Genot. Uncor. p-value | Control Genotype frec (%) Genotype cases (n) | HM Genotype frec (%) Genotype cases (n) | Genotype Uncorrected p-value | Genotype OR (95% CI) |
| AA/AC/CC | 91.3/8.7/0 63/3/0 | 93.4/6.0/0.6 157/10/1 | 0.79 | 94.6/5.4/0 35/2/0 | 95.2/4.8/0 79/4/0 | 0.76 | 92.5/7.5/0 98/8/0 | 94/5.6/0.4 235/14/1 | C; 0.63 | 0.80 (0.3–2.1) | |
| AA/AG/GG | 34.4/48.7/17.2 22/31/11 | 29.8/51.6/18.6 48/83/30 | 0.71 | 26.9/34.6/38.5 7/9/10 | 33.3/43.2/23.5 27/35/19 | 0.53 | 32.2/44.4/23.3 29/40/21 | 31/48.8/20.2 75/118/49 | C; 0.62 | 1.24 (0.7–2.3) | |
| AA/AG/GG | 35.4/45.6/19 28/36/15 | 29.3/44.2/26.5 63/95/57 | 0.27 | 33.3/56.7/10 10/17/3 | 30.7/46.5/22.8 31/47/23 | 0.22 | 34.9/48.6/16.5 38/53/18 | 29.3/45.2/25.5 92/142/80 | R; 0.08 | 1.65 (0.9–3.0) | |
| CC/CT/TT | 83.8/16.2/0 62/12/0 | 82.3/15.8/1.9 177/34/4 | 0.24 | 93.5/6.5/0 29/2/0 | 73/23.4/3.6 81/26/4 | 0.13 | 86.7/13.3/0 91/14/0 | 79.3/18.6/2.1 256/60/7 | R; 0.07 | NA (0.0-NA) | |
| AA/AC/CC | 87.6/12.4/0 78/11/0 | 93.5/5.6/0.9 101/6/1 | 0.37 | 90/10/0 27/3/0 | 90.1/9.9/0 100/11/0 | 0.6 | 88.2/11.8/0 105/14/0 | 91.8/7.8/0.4 201/17/1 | C; 0.64 | 0.68 (0.3–1.6) | |
| CC/CT/TT | 30.3/46.1/23.6 27/41/21 | 29.5/49.3/21.2 64/107/46 | 0.40 | 13.3/53.3/33.3 4/16/10 | 39.6/37.8/22.5 44/42/25 | 26.1/47.9/26.1 31/57/31 | 33.1/45.4/21.5 108/148/70 | D; 0.43 | 0.71 (0.4–1.2) | ||
| CC/CT/TT | 89 | 213 | - | 30 | 110 | - | 119 | 322 | - | - | |
| AA/AG/GG | 88 | 213 | - | 29 | 110 | - | 117 | 322 | - | - | |
Chr: Chromosome; Genotype freq: Genotype frequency; OR: Odds ratio; CI: Confidence interval; P-value: value from logistic regression model; P value significance < 0.05. C; Codominant model (XX vs XY vs YY), R; Recessive model (XX-XY vs YY) D; Dominant model (XX vs XY-YY).
Comparison of the genotype frequencies between the MM vs. No MM group.
| Cohort 1 | Cohort 2 | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| SNPs | Genotype | MM-Genotype frec (%) Genotype cases (n) | MM+ Genotype frec (%) Genotype cases (n) | Genot. Uncor. p-value | MM- Genotype frec (%) Genotype cases (n) | MM+ Genotype frec (%) Genotype cases (n) | Genot. Uncor. p-value | MM- Genotype frec (%) Genotype cases (n) | MM+ Genotype frec (%) Genotype cases (n) | Genotype Uncorrected p-value | Genotype OR (95% CI) |
| AA/AC/CC | 94.9/2.6/2.6 37/1/1 | 93/7.0/0 119/9/0 | 0.08 | 100/0/0 15/0/0 | 94.1/5.9/0 64/4/0 | 0.24 | 96.3/1.8/1.8 52/1/1 | 93.4/6.6/0 183/13/0 | C; 0.076 | 3.86 (0.5–38.4) | |
| AA/AG/GG | 42.2/36.8/21 16/14/8 | 26/56.1/17.9 32/69/22 | 0.19 | 25/55/20 5/11/4 | 36/39.3/24.7 22/24/15 | 0.38 | 36.2/43.1/20.7 21/25/12 | 29.4/50.5/20.1 54/93/37 | C; 0.49 | 1.26 (0.7–2.5) | |
| AA/AG/GG | 27.4/31.4/41.2 14/16/21 | 29/48.8/22.2 47/79/36 | 21.7/60.9/17.4 5/14/4 | 33.3/42.3/24.4 26/33/19 | 0.37 | 25.7/40.5/33.8 19/30/25 | 30.4/46.7/22.9 73/112/55 | R; 0.06 | 0.54 (0.3–1.1) | ||
| CC/CT/TT | 89.4/10.6/0 42/5/0 | 80.6/17.6/1.8 133/29/3 | 0.29 | 76.9/23.1/0 20/6/0 | 71.8/23.5/4.7 61/20/4 | 0.44 | 84.9/15.1/0 62/11/0 | 77.6/19.6/2.8 194/49/7 | R; 0.10 | NA (0.00-NA) | |
| AA/AC/CC | 90.9/9.1/0 10/1/0 | 94.6/5.4/0 88/5/0 | 0.88 | 88.4/11.6/0 23/3/0 | 90.6/9.4/0 77/8/0 | 0.86 | 89.1/10.8/0 33/4/0 | 92.3/7.2/0.5 168/13/1 | C; 0.83 | 0.84 (0.2–3.1) | |
| CC/CT/TT | 36.7/44.9/18.4 18/22/9 | 27.7/50.6/21.7 46/84/36 | 0.11 | 48/40/12 12/10/3 | 37.2/37.2/25.6 32/32/22 | 0.15 | 40.5/43.2/16.2 30/32/12 | 31/46/23 78/116/58 | 2.08 (1.0–4.4) | ||
| CC/CT/TT | 49 | 164 | - | 26 | 83 | - | 75 | 247 | - | - | |
| AA/AG/GG | 47 | 164 | - | 26 | 82 | - | 77 | 246 | - | - | |
Chr: Chromosome; Genotype freq: Genotype frequency; OR: Odds ratio; CI: Confidence interval; P-value: value from logistic regression model adjusted by age and gender; P value significance < 0.05. C; Codominant model (XX vs XY vs YY), R; Recessive model (XX-XY vs YY) D; Dominant model (XX vs XY-YY).
* Bonferroni correction p value.
Comparison of the genotype frequencies between CNV vs. No CNV group.
| Cohort 1 | Cohort 2 | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| SNPs | Genotype | CNV-Genotype frec (%) Genotype cases (n) | CNV+ Genotype frec (%) Genotype cases (n) | Genot. Uncor. p-value | CNV-Genotype frec (%) Genotype cases (n) | CNV+ Genotype frec (%) Genotype cases (n) | Genot. Uncor. p-value | CNV-Genotype frec (%) Genotype cases (n) | CNV+ Genotype frec (%) Genotype cases (n) | Genotype Uncorrected p-value | Genotype OR (95% CI) |
| AA/AC/CC | 94.4/4.5/1.1 84/4/1 | 92.3/7.7/0 72/6/0 | 0.33 | 92.9/7.1/0 26/2/0 | 96.4/3.6/0 53/2/0 | 0.35 | 94/5.1/0.9 110/6/1 | 94/6/0 125/8/0 | C; 0.49 | 1.69 (0.4–3.6) | |
| AA/AG/GG | 33.3/48.9/17.8 30/44/16 | 25.4/54.9/19.7 18/39/14 | 0.69 | 27.8/52.8/19.4 10/19/7 | 37.8/35.6/26.6 17/16/12 | 0.28 | 31.7/50/18.3 40/63/23 | 30.2/47.4/22.4 35/55/26 | C; 0.28 | 01.34 (0.6–2.9) | |
| AA/AG/GG | 26.4/44.7/28.9 32/54/35 | 31.9/45/23.1 29/41/21 | 0.40 | 26.2/54.8/19.1 11/23/8 | 33.9/40.7/25.4 20/24/15 | 0.43 | 26.2/47/26.8 43/77/44 | 32.7/43.3/24 49/65/36 | R; 0.69 | 0.9 (0.5–1.5) | |
| CC/CT/TT | 83.6/16.4/0 102/20/0 | 81.5/15.2/3.3 75/14/3 | 77.3/22.7/0 34/10/0 | 70.2/23.9/6 47/16/4 | 0.07 | 81.9/18.1/0 136/30/0 | 76.7/18.9/4.4 122/30/7 | ||||
| AA/AC/CC | 94.9/5.1/0 37/2/0 | 92.6/5.9/1.5 63/14/1 | 0.70 | 86.7/13.3/0 39/6/0 | 92.5/7.5/0 62/5/0 | 0.29 | 90.5/9.5/0 76/8/0 | 86.2/13.1/0.7 125/19/1 | C; 0.51 | NA (0.00-NA) | |
| CC/CT/TT | 34.7/43/22.3 42/52/27 | 23.6/57/19.4 22/53/18 | 0.33 | 44.4/33.3/22.2 20/15/10 | 37.3/40.3/22.4 25/27/15 | 0.91 | 37.3/40.4/22.3 62/67/37 | 29.4/50/20.6 47/80/33 | D; 0.28 | 1.26 (0.8–2.1) | |
| CC/CT/TT | 120 | 92 | - | 44 | 66 | - | 164 | 158 | - | - | |
| AA/AG/GG | 120 | 93 | - | 44 | 66 | - | 164 | 159 | - | - | |
Chr: Chromosome; Genotype freq: Genotype frequency; OR: Odds ratio; CI: Confidence interval; P-value: value from logistic regression model adjusted by age and gender; P value significance < 0.05. C; Codominant model (XX vs XY vs YY), R; Recessive model (XX-XY vs YY) D; Dominant model (XX vs XY-YY).
* Bonferroni correction p value.
Fig 4Human eye tissues expression.
CCDC102B, COL8A1 and SCO2 genes were expressed in retina, RPE and sclera of cadaveric donors. COL8A1 showed an overexpression of more than 300 times in human sclera when compared with the expression in RPE and retina.