Literature DB >> 27618190

A chemical-inducible CRISPR-Cas9 system for rapid control of genome editing.

Kaiwen Ivy Liu1, Muhammad Nadzim Bin Ramli1, Cheok Wei Ariel Woo1, Yuanming Wang1,2, Tianyun Zhao1, Xiujun Zhang1,2, Guo Rong Daniel Yim1, Bao Yi Chong1,3, Ali Gowher1, Mervyn Zi Hao Chua1,4, Jonathan Jung1, Jia Hui Jane Lee1, Meng How Tan1,2.   

Abstract

CRISPR-Cas9 has emerged as a powerful technology that enables ready modification of the mammalian genome. The ability to modulate Cas9 activity can reduce off-target cleavage and facilitate precise genome engineering. Here we report the development of a Cas9 variant whose activity can be switched on and off in human cells with 4-hydroxytamoxifen (4-HT) by fusing the Cas9 enzyme with the hormone-binding domain of the estrogen receptor (ERT2). The final optimized variant, termed iCas, showed low endonuclease activity without 4-HT but high editing efficiency at multiple loci with the chemical. We also tuned the duration and concentration of 4-HT treatment to reduce off-target genome modification. Additionally, we benchmarked iCas against other chemical-inducible methods and found that it had the fastest on rate and that its activity could be toggled on and off repeatedly. Collectively, these results highlight the utility of iCas for rapid and reversible control of genome-editing function.

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Year:  2016        PMID: 27618190     DOI: 10.1038/nchembio.2179

Source DB:  PubMed          Journal:  Nat Chem Biol        ISSN: 1552-4450            Impact factor:   15.040


  35 in total

1.  Double nicking by RNA-guided CRISPR Cas9 for enhanced genome editing specificity.

Authors:  F Ann Ran; Patrick D Hsu; Chie-Yu Lin; Jonathan S Gootenberg; Silvana Konermann; Alexandro E Trevino; David A Scott; Azusa Inoue; Shogo Matoba; Yi Zhang; Feng Zhang
Journal:  Cell       Date:  2013-08-29       Impact factor: 41.582

2.  Conditional knockouts generated by engineered CRISPR-Cas9 endonuclease reveal the roles of coronin in C. elegans neural development.

Authors:  Zhongfu Shen; Xianliang Zhang; Yongping Chai; Zhiwen Zhu; Peishan Yi; Guoxin Feng; Wei Li; Guangshuo Ou
Journal:  Dev Cell       Date:  2014-08-21       Impact factor: 12.270

3.  A split-Cas9 architecture for inducible genome editing and transcription modulation.

Authors:  Bernd Zetsche; Sara E Volz; Feng Zhang
Journal:  Nat Biotechnol       Date:  2015-02       Impact factor: 54.908

4.  Unbiased detection of off-target cleavage by CRISPR-Cas9 and TALENs using integrase-defective lentiviral vectors.

Authors:  Xiaoling Wang; Yebo Wang; Xiwei Wu; Jinhui Wang; Yingjia Wang; Zhaojun Qiu; Tammy Chang; He Huang; Ren-Jang Lin; Jiing-Kuan Yee
Journal:  Nat Biotechnol       Date:  2015-01-19       Impact factor: 54.908

5.  Targeted genome engineering in human cells with the Cas9 RNA-guided endonuclease.

Authors:  Seung Woo Cho; Sojung Kim; Jong Min Kim; Jin-Soo Kim
Journal:  Nat Biotechnol       Date:  2013-01-29       Impact factor: 54.908

6.  Efficient genome modification by CRISPR-Cas9 nickase with minimal off-target effects.

Authors:  Bin Shen; Wensheng Zhang; Jun Zhang; Jiankui Zhou; Jianying Wang; Li Chen; Lu Wang; Alex Hodgkins; Vivek Iyer; Xingxu Huang; William C Skarnes
Journal:  Nat Methods       Date:  2014-03-02       Impact factor: 28.547

7.  Psammaplin A as a general activator of cell-based signaling assays via HDAC inhibition and studies on some bromotyrosine derivatives.

Authors:  Malcolm W B McCulloch; Gary S Coombs; Nikhil Banerjee; Tim S Bugni; Kendell M Cannon; Mary Kay Harper; Charles A Veltri; David M Virshup; Chris M Ireland
Journal:  Bioorg Med Chem       Date:  2008-11-05       Impact factor: 3.641

8.  CAS9 transcriptional activators for target specificity screening and paired nickases for cooperative genome engineering.

Authors:  Prashant Mali; John Aach; P Benjamin Stranges; Kevin M Esvelt; Mark Moosburner; Sriram Kosuri; Luhan Yang; George M Church
Journal:  Nat Biotechnol       Date:  2013-08-01       Impact factor: 54.908

9.  Improving CRISPR-Cas nuclease specificity using truncated guide RNAs.

Authors:  Yanfang Fu; Jeffry D Sander; Deepak Reyon; Vincent M Cascio; J Keith Joung
Journal:  Nat Biotechnol       Date:  2014-01-26       Impact factor: 54.908

10.  Optical control of mammalian endogenous transcription and epigenetic states.

Authors:  Silvana Konermann; Mark D Brigham; Alexandro Trevino; Patrick D Hsu; Matthias Heidenreich; Le Cong; Randall J Platt; David A Scott; George M Church; Feng Zhang
Journal:  Nature       Date:  2013-08-23       Impact factor: 49.962

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  65 in total

1.  Spatiotemporal Control of CRISPR/Cas9 Function in Cells and Zebrafish using Light-Activated Guide RNA.

Authors:  Wenyuan Zhou; Wes Brown; Anirban Bardhan; Michael Delaney; Amber S Ilk; Randy R Rauen; Shoeb I Kahn; Michael Tsang; Alexander Deiters
Journal:  Angew Chem Int Ed Engl       Date:  2020-04-06       Impact factor: 15.336

Review 2.  Approach for in vivo delivery of CRISPR/Cas system: a recent update and future prospect.

Authors:  Yu-Fan Chuang; Andrew J Phipps; Fan-Li Lin; Valerie Hecht; Alex W Hewitt; Peng-Yuan Wang; Guei-Sheung Liu
Journal:  Cell Mol Life Sci       Date:  2021-01-03       Impact factor: 9.261

3.  Near-infrared optogenetic engineering of photothermal nanoCRISPR for programmable genome editing.

Authors:  Xiaohong Chen; Yuxuan Chen; Huhu Xin; Tao Wan; Yuan Ping
Journal:  Proc Natl Acad Sci U S A       Date:  2020-01-15       Impact factor: 11.205

Review 4.  Genome editing with CRISPR-Cas nucleases, base editors, transposases and prime editors.

Authors:  Andrew V Anzalone; Luke W Koblan; David R Liu
Journal:  Nat Biotechnol       Date:  2020-06-22       Impact factor: 54.908

Review 5.  Functional interrogation of non-coding DNA through CRISPR genome editing.

Authors:  Matthew C Canver; Daniel E Bauer; Stuart H Orkin
Journal:  Methods       Date:  2017-03-10       Impact factor: 3.608

6.  Doxycycline-Dependent Self-Inactivation of CRISPR-Cas9 to Temporally Regulate On- and Off-Target Editing.

Authors:  Anju Kelkar; Yuqi Zhu; Theodore Groth; Gino Stolfa; Aimee B Stablewski; Naina Singhi; Michael Nemeth; Sriram Neelamegham
Journal:  Mol Ther       Date:  2019-09-12       Impact factor: 11.454

7.  Chemically Controlled Epigenome Editing through an Inducible dCas9 System.

Authors:  Tingjun Chen; Dan Gao; Roushu Zhang; Guihua Zeng; Hao Yan; Eunju Lim; Fu-Sen Liang
Journal:  J Am Chem Soc       Date:  2017-08-10       Impact factor: 15.419

Review 8.  Conditional replication of oncolytic viruses based on detection of oncogenic mRNA.

Authors:  M Renteln
Journal:  Gene Ther       Date:  2018-01-19       Impact factor: 5.250

Review 9.  Precision Control of CRISPR-Cas9 Using Small Molecules and Light.

Authors:  Soumyashree A Gangopadhyay; Kurt J Cox; Debasish Manna; Donghyun Lim; Basudeb Maji; Qingxuan Zhou; Amit Choudhary
Journal:  Biochemistry       Date:  2019-01-22       Impact factor: 3.162

Review 10.  CRISPR RNA-guided autonomous delivery of Cas9.

Authors:  Royce A Wilkinson; Coleman Martin; Artem A Nemudryi; Blake Wiedenheft
Journal:  Nat Struct Mol Biol       Date:  2018-12-31       Impact factor: 15.369

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