Literature DB >> 27614792

Gland segmentation in colon histology images: The glas challenge contest.

Korsuk Sirinukunwattana1, Josien P W Pluim2, Hao Chen3, Xiaojuan Qi3, Pheng-Ann Heng3, Yun Bo Guo4, Li Yang Wang4, Bogdan J Matuszewski4, Elia Bruni5, Urko Sanchez5, Anton Böhm6, Olaf Ronneberger7, Bassem Ben Cheikh8, Daniel Racoceanu8, Philipp Kainz9, Michael Pfeiffer10, Martin Urschler11, David R J Snead12, Nasir M Rajpoot13.   

Abstract

Colorectal adenocarcinoma originating in intestinal glandular structures is the most common form of colon cancer. In clinical practice, the morphology of intestinal glands, including architectural appearance and glandular formation, is used by pathologists to inform prognosis and plan the treatment of individual patients. However, achieving good inter-observer as well as intra-observer reproducibility of cancer grading is still a major challenge in modern pathology. An automated approach which quantifies the morphology of glands is a solution to the problem. This paper provides an overview to the Gland Segmentation in Colon Histology Images Challenge Contest (GlaS) held at MICCAI'2015. Details of the challenge, including organization, dataset and evaluation criteria, are presented, along with the method descriptions and evaluation results from the top performing methods.
Copyright © 2016 Elsevier B.V. All rights reserved.

Entities:  

Keywords:  Colon cancer; Digital pathology; Histology image analysis; Intestinal gland; Segmentation

Mesh:

Year:  2016        PMID: 27614792     DOI: 10.1016/j.media.2016.08.008

Source DB:  PubMed          Journal:  Med Image Anal        ISSN: 1361-8415            Impact factor:   8.545


  44 in total

Review 1.  Deep learning in histopathology: the path to the clinic.

Authors:  Jeroen van der Laak; Geert Litjens; Francesco Ciompi
Journal:  Nat Med       Date:  2021-05-14       Impact factor: 53.440

2.  Connecting Markov random fields and active contour models: application to gland segmentation and classification.

Authors:  Jun Xu; James P Monaco; Rachel Sparks; Anant Madabhushi
Journal:  J Med Imaging (Bellingham)       Date:  2017-03-28

3.  Computerized spermatogenesis staging (CSS) of mouse testis sections via quantitative histomorphological analysis.

Authors:  Jun Xu; Haoda Lu; Haixin Li; Chaoyang Yan; Xiangxue Wang; Min Zang; Dirk G de Rooij; Anant Madabhushi; Eugene Yujun Xu
Journal:  Med Image Anal       Date:  2020-10-10       Impact factor: 8.545

4.  Standardized Assessment of Automatic Segmentation of White Matter Hyperintensities and Results of the WMH Segmentation Challenge.

Authors:  Hugo J Kuijf; J Matthijs Biesbroek; Jeroen De Bresser; Rutger Heinen; Simon Andermatt; Mariana Bento; Matt Berseth; Mikhail Belyaev; M Jorge Cardoso; Adria Casamitjana; D Louis Collins; Mahsa Dadar; Achilleas Georgiou; Mohsen Ghafoorian; Dakai Jin; April Khademi; Jesse Knight; Hongwei Li; Xavier Llado; Miguel Luna; Qaiser Mahmood; Richard McKinley; Alireza Mehrtash; Sebastien Ourselin; Bo-Yong Park; Hyunjin Park; Sang Hyun Park; Simon Pezold; Elodie Puybareau; Leticia Rittner; Carole H Sudre; Sergi Valverde; Veronica Vilaplana; Roland Wiest; Yongchao Xu; Ziyue Xu; Guodong Zeng; Jianguo Zhang; Guoyan Zheng; Christopher Chen; Wiesje van der Flier; Frederik Barkhof; Max A Viergever; Geert Jan Biessels
Journal:  IEEE Trans Med Imaging       Date:  2019-03-19       Impact factor: 10.048

Review 5.  Recent Advances of Deep Learning for Computational Histopathology: Principles and Applications.

Authors:  Yawen Wu; Michael Cheng; Shuo Huang; Zongxiang Pei; Yingli Zuo; Jianxin Liu; Kai Yang; Qi Zhu; Jie Zhang; Honghai Hong; Daoqiang Zhang; Kun Huang; Liang Cheng; Wei Shao
Journal:  Cancers (Basel)       Date:  2022-02-25       Impact factor: 6.639

6.  Path R-CNN for Prostate Cancer Diagnosis and Gleason Grading of Histological Images.

Authors:  Wenyuan Li; Jiayun Li; Karthik V Sarma; King Chung Ho; Shiwen Shen; Beatrice S Knudsen; Arkadiusz Gertych; Corey W Arnold
Journal:  IEEE Trans Med Imaging       Date:  2018-10-12       Impact factor: 10.048

Review 7.  Artificial intelligence in digital pathology - new tools for diagnosis and precision oncology.

Authors:  Kaustav Bera; Kurt A Schalper; David L Rimm; Vamsidhar Velcheti; Anant Madabhushi
Journal:  Nat Rev Clin Oncol       Date:  2019-08-09       Impact factor: 66.675

8.  Open-Source Automatic Segmentation of Ocular Structures and Biomarkers of Microbial Keratitis on Slit-Lamp Photography Images Using Deep Learning.

Authors:  Jessica Loo; Matthias F Kriegel; Megan M Tuohy; Kyeong Hwan Kim; Venkatesh Prajna; Maria A Woodward; Sina Farsiu
Journal:  IEEE J Biomed Health Inform       Date:  2021-01-05       Impact factor: 5.772

9.  Dual-stream Multiple Instance Learning Network for Whole Slide Image Classification with Self-supervised Contrastive Learning.

Authors:  Bin Li; Yin Li; Kevin W Eliceiri
Journal:  Conf Comput Vis Pattern Recognit Workshops       Date:  2021-11-13

Review 10.  State of machine and deep learning in histopathological applications in digestive diseases.

Authors:  Soma Kobayashi; Joel H Saltz; Vincent W Yang
Journal:  World J Gastroenterol       Date:  2021-05-28       Impact factor: 5.742

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